| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | AM260479 | 3,390,388 | Δ2 bp :: ISAE1 (+) +8 bp :: +CC | coding (488‑495/1047 nt) | h16_A3132 → | response regulator containing an atypical phosphorylation pocket |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3390388 = | 0 (0.000) | 26 (0.970) | 21/208 | 0.3 | 100% | coding (488/1047 nt) | h16_A3132 | response regulator containing an atypical phosphorylation pocket |
| ? | AM260479 | = 3400456 | NA (NA) | noncoding (2/8 nt) | DR‑R ISAE1 | direct repeat DR‑R ISAE1 | |||||
| * | ? | AM260479 | = 3390395 | 0 (0.000) | 41 (1.550) | 24/206 | 0.2 | 100% | coding (495/1047 nt) | h16_A3132 | response regulator containing an atypical phosphorylation pocket |
| ? | AM260479 | 3399144 = | NA (NA) | noncoding (3/1313 nt) | ISAE1 | insertion sequence ISAE1 | |||||
GTGATGGCCGGATCGGACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3390517‑3390388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < AM260479/3400456‑3400331 GTGATGGCCGGATCGGACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCT < 1:158546/134‑1 GACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAG > 2:619630/1‑134 GGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCA > 1:585972/1‑134 ACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCAGATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGC > 2:1077088/1‑134 AGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGA < 2:847132/134‑1 TGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAG > 2:596518/1‑134 TGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGC > 2:309387/1‑128 TGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGC < 1:309387/128‑1 GCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGG < 1:1077088/133‑1 AAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGA < 1:596518/134‑1 ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAA < 1:167241/54‑1 ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAA > 2:167241/1‑54 ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAA < 2:809163/52‑1 ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAA > 1:809163/1‑52 GGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTT > 2:585411/1‑134 CCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTT < 2:585972/134‑1 TTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG < 2:994994/116‑1 TTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG > 1:994994/1‑116 CCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCA > 1:385534/1‑133 TCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAAC > 1:701711/1‑134 GCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCG < 1:843708/134‑1 GCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCG > 1:1172865/1‑134 GCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG < 2:298243/105‑1 GCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG > 1:298243/1‑105 CATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < 2:385534/134‑1 CATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < 1:619630/134‑1 GTGATGGCCGGATCGGACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3390517‑3390388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < AM260479/3400456‑3400331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |