New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	1002490 =	20 (0.750)	5 (0.200)	5/192	1.7	18.7%	coding (455/1467 nt)	cafA1	Ribonuclease G and E
	?	AM260479	1002530 =	25 (1.010)					coding (415/1467 nt)	cafA1	Ribonuclease G and E
Rejected: Frequency below/above cutoff threshold.

CGAGTTCTTCGTCGGTCGCTTCCTCGGCAATGGTGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCTTGATCACCTGCACCATGAGTGCCTGGCCTTCGAA  >  AM260479/1002401‑1002662                                                                                                                                  |                                                                                                                                     cGAGTTCTTCGTCGGTCGCTTCCTCGGCAATGGTGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATg                                                                                                                                  <  1:805771/134‑1 (MQ=255)   aGTTCTTCGTCGGTCGCTTCCTCGGCAATGGTGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGcc                                                                                                                                >  1:1007379/1‑134 (MQ=255)              ggtcgCTTCCTCGGCAATGGTGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGt                                                                                                                     >  1:456814/1‑134 (MQ=255)                tcgCTTCCTCGGCAATGGTGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTcc                                                                                                                   <  2:456814/134‑1 (MQ=255)                tcgCTTCCTCGGCAATGGTGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTcc                                                                                                                   <  2:317338/134‑1 (MQ=255)                  gcctgtccacccaggtgagcatcgccgggcgcaccctggtgtacctgccgcaggacccgcatatcggcatctcgcagcgcatcgagggcgaagaggaccgcgaggcgctgcgAGATGCCGATATGCGGGTCCTg                                                                                                                 >  2:937999‑M2/113‑134 (MQ=255)                  gCTTCCTCGGCAATGGTGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTg                                                                                                                 <  2:1007379/134‑1 (MQ=255)                   cTTCCTCGGCAATGGTGCGCACGATAAATCCGACGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATg                                                                                                                                  >  2:798600/1‑116 (MQ=255)                   cTTCCTCGGCAATGGTGCGCACGATAAATCCGACGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATg                                                                                                                                  <  1:798600/116‑1 (MQ=255)                                  tGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAgg                                                                                                 >  2:525540/1‑134 (MQ=255)                                  gagcatcgccgggcgcaccctggtgtacctgccgcaggacccgcatatcggcatctCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGTCAGGTACACCAgg                                                                                                 <  2:776658‑M1/78‑1 (MQ=255)                                   agcatcgccgggcgcaccctggtgtacctgccgcaggacccgcatatcggcatctcgcagcgcatcgagggcgaagtggaccgcgaggcgctgcgAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAggg                                                                                                <  1:937999‑M2/39‑1 (MQ=255)                                        cGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAgg                                                                                                          <  1:429125/119‑1 (MQ=255)                                        cGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAgg                                                                                                          >  2:429125/1‑119 (MQ=255)                                          ccgggcgcaccctggtgtacctgccgcaggacccgcatatcggcatctcgcagcgcatcgagggcgaagtggaccgcgaggcgctgcgAGAt                                                                                                                                   <  1:752410‑M2/4‑1 (MQ=255)                                          ccgggcgcaccctggtgtacctgccgcaggacccgcatatcggcatctcgcagcgcatcgagggcgaagtggaccgcgaggcgctgcgAGAt                                                                                                                                   >  2:752410‑M2/89‑92 (MQ=255)                                          aTAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGccc                                                                                         >  2:1113643/1‑134 (MQ=255)                                               tCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGa                                                                                    <  1:1113643/134‑1 (MQ=255)                                                   ccctggtgtacctgccgcaggacccgcatatcggcatctCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCt                                                                                <  1:937999‑M1/95‑1 (MQ=255)                                                    cctggtgtacctgacgcaggacccgcatatcggcatctcgcagcgcatcgagggcgaagtggaccgcgaggcgctgcgAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTc                                                                               <  2:776658‑M2/56‑1 (MQ=255)                                                       gcTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCAcc                                                                            >  2:1004740/1‑134 (MQ=255)                                                                    caggacccgcatatcggcatctCGCAGCGCCTCGCGGTCCTCTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGgc                                                               >  2:937999‑M1/23‑134 (MQ=255)                                                                                      atctCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCgg                                                                                       <  1:752410‑M1/88‑1 (MQ=255)                                                                                      atctCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCgg                                                                                       >  2:752410‑M1/5‑92 (MQ=255)                                                                                         gcgcAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGc                                                                                      >  1:1155165/1‑90 (MQ=255)                                                                                         gcgcAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGc                                                                                      <  2:1155165/90‑1 (MQ=255)                                                                                          CGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATc                                           >  2:404559‑M1/1‑132 (MQ=255)                                                                                           GCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCggg                                        <  2:1020032‑M1/134‑1 (MQ=255)                                                                                              GCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTcc                                     <  2:136094‑M1/134‑1 (MQ=255)                                                                                               CGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCt                                    >  1:776658‑M1/1‑134 (MQ=255)                                                                                                     gcgGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCt                                    >  2:1079516/1‑128 (MQ=255)                                                                                                     gcgGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCt                                    <  1:1079516/128‑1 (MQ=255)                                                                                                     gcgGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCTTGAt                                <  2:28335/132‑1 (MQ=255)                                                                                                     gcgGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCTTGAt                                <  1:136094/132‑1 (MQ=255)                                                                                                     gcgGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCTTGAt                                <  1:1020032/132‑1 (MQ=255)                                                                                                               tCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGa                                                                    >  2:1117274/1‑86 (MQ=255)                                                                                                               tCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGa                                                                    <  1:1117274/86‑1 (MQ=255)                                                                                                                  cccTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTc                                      >  2:564408/1‑113 (MQ=255)                                                                                                                  cccTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTc                                      <  1:564408/113‑1 (MQ=255)                                                                                                                                 gAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCTTGATCACCTGCACCATGAGTGCCTGGCCTTCGaa  >  2:849196‑M2/2‑134 (MQ=255)                                                                                                                                  |                                                                                                                                     CGAGTTCTTCGTCGGTCGCTTCCTCGGCAATGGTGCGCACGATAAATCCGCCGCGCTCGTCGTCGGGCACCAGGCCCTGCACGCGGCTGCGCAGCGCCTCGCGGTCCACTTCGCCCTCGATGCGCTGCGAGATGCCGATATGCGGGTCCTGCGGCAGGTACACCAGGGTGCGCCCGGCGATGCTCACCTGGGTGGACAGGCGCGCCCCCTTGGTGCCGATCGGGTCCTTGATCACCTGCACCATGAGTGCCTGGCCTTCGAA  >  AM260479/1002401‑1002662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.