New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2437242	25 (0.940)	6 (0.250)	6/188	1.5	19.2%	coding (664/1029 nt)	ssuA1	ABC‑type transporter, periplasmic component: TauT family
	?	AM260479	= 2437275	28 (1.160)					coding (631/1029 nt)	ssuA1	ABC‑type transporter, periplasmic component: TauT family
Rejected: Frequency below/above cutoff threshold.

GCTGACGATCTCCGGCTTGGCTTGTGCATAGGGGCGCGAGGCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCTGGATCTCGTTGTAAGGGATGCCGGCCTT  >  AM260479/2437150‑2437398                                                                                                                              |                                                                                                                            gCTGACGATCTCCGGCTTGGCTTGTGCATAGGGGCGCGAGGCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCggccgcgg                                                                                                                     >  1:184524‑M2/1‑126 (MQ=255)      cGATCTCCGGCTTGGCTTGTGCATAGGGGCGCGAGGCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAgg                                                                                                                <  1:709286/134‑1 (MQ=255)                             tAGGGGCGCGAGGCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAgg                                                                                          >  1:61962/1‑133 (MQ=255)                                  gcgcGAGGCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCggccgcggcgcggacggcaagaacgtggt                                                                                                <  1:11033‑M2/122‑30 (MQ=255)                                  gcgcGAGGCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCggccgcggcgcggacggcaagaacgtggt                                                                                                >  2:11033‑M2/1‑93 (MQ=255)                                       aGGCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGAccgcg                                                                               >  2:694852/1‑134 (MQ=255)                                         gCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCggccgcggcgcggacggcaa                                                                                                         <  1:762318‑M2/106‑21 (MQ=255)                                         gCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCggccgcggcgcggacggcaa                                                                                                         >  2:762318‑M2/1‑86 (MQ=255)                                                 gAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCg                                                                      <  1:526715/133‑1 (MQ=255)                                                      ggtggtTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAggcg                                                                >  2:638152/1‑134 (MQ=255)                                                           ttGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTccc                                                                                                      >  2:686249/1‑91 (MQ=255)                                                           ttGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTccc                                                                                                      <  1:686249/91‑1 (MQ=255)                                                                         cTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGAt                                                                                                  <  1:934849/81‑1 (MQ=255)                                                                         cTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGAt                                                                                                  >  2:934849/1‑81 (MQ=255)                                                                              cGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAgg                                        <  2:699183/134‑1 (MQ=255)                                                                               gTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGAc                                                                                   >  1:796665/1‑90 (MQ=255)                                                                               gTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGAc                                                                                   <  2:796665/90‑1 (MQ=255)                                                                                  ctcgccgcgGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGa                                    >  2:474424/3‑134 (MQ=255)                                                                                    cgccgcgGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGa                                                                                                                  <  1:915485/54‑1 (MQ=255)                                                                                    cgccgcgGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGa                                                                                                                  >  2:915485/1‑54 (MQ=255)                                                                                     gccgcgGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGAcc                                  <  1:474424/133‑1 (MQ=255)                                                                                      ccgcgGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCgg                                >  1:804553/1‑134 (MQ=255)                                                                                      ccgcgGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCgg                                >  2:1051820/1‑134 (MQ=255)                                                                                        gcgGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCt                              <  2:61962/134‑1 (MQ=255)                                                                                        gcgGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCt                              >  1:374508/1‑134 (MQ=255)                                                                                             cATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCTGGAtc                         >  1:518039/1‑134 (MQ=255)                                                                                               tCGGCGAGCACGCGCGCACCCAGTTGCTTCTCggccgcggcgcggacggcaagaacgtggtcagcaaccaccagttctacctggcctcgcgcccctatgcacaagccaagccggagatcgtcagcctgatc                          <  1:1108352‑M2/131‑100 (MQ=255)                                                                                               tCGGCGAGCACGCGCGCACCCAGTTGCTTCTCggccgcggcgcggacggcaagaacgtggtcagcaaccaccagttctacctggcctcgcgcccctatgcacaagccaagccggagatcgtcagcctgatc                          >  2:1108352‑M2/1‑32 (MQ=255)                                                                                                            gcgcACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCTGGATCTCGTTGTAAGGGATg          <  1:694852/134‑1 (MQ=255)                                                                                                                 cccAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCTGGATCTCGTTGTAAGGGATGCCGGc     >  2:692839/1‑134 (MQ=255)                                                                                                                    aGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCTGGATCTCGTTGTAAGGGATGCCGGCCtt  >  1:495882/1‑134 (MQ=255)                                                                                                                     gTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCAt                                                                                       >  1:946206/1‑48 (MQ=255)                                                                                                                     gTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCAt                                                                                       <  2:946206/48‑1 (MQ=255)                                                                                                                            ctcGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCTgg                            >  2:631197/1‑100 (MQ=255)                                                                                                                            ctcGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCTgg                            <  1:631197/100‑1 (MQ=255)                                                                                                                              |                                                                                                                            GCTGACGATCTCCGGCTTGGCTTGTGCATAGGGGCGCGAGGCCAGGTAGAACTGGTGGTTGCTGACCACGTTCTTGCCGTCCGCGCCGCGGCCATCGGCGAGCACGCGCGCACCCAGTTGCTTCTCGGCCGCGGCGAGGAACGGGTCCCAGATCACCCAGGCATCGACCGCGCCGCGCTCGAAGGCGGCACGCGCATCCGCCGGCGGCAGGTAGACCGGCTGGATCTCGTTGTAAGGGATGCCGGCCTT  >  AM260479/2437150‑2437398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.