Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	570447	570477	31	2 [0]	[0] 2	h16_A0542/h16_A0543	signal transduction histidine kinase/response regulator, OmpR‑family

CGCGCCGCCAGGGCAGTCGCAGCAGGCTCATCTCGGCGAGGTTGCGCTCAGGTCAGTCGCGTGGCCTGCGGTG  >  AM260479/570478‑570550 |                                                                         cgcgCCGCCAGGGCAGTCGCAGCAGGCTCATCTCGGCGAGGTTGCGCTCAGGTCAGTCGCGTGGCCTGCGGTg  <  1:1158707/73‑1 (MQ=255) cgcgCCGCCAGGGCAGTCGCAGCAGGCTCATCTCGGCGAGGTTGCGCTCAGGTCAGTCGCGTGGCCTGCGGTg  >  2:1158707/1‑73 (MQ=255) |                                                                         CGCGCCGCCAGGGCAGTCGCAGCAGGCTCATCTCGGCGAGGTTGCGCTCAGGTCAGTCGCGTGGCCTGCGGTG  >  AM260479/570478‑570550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑