Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	1257922	1257925	4	2 [0]	[0] 2	h16_A1156	Site‑specific recombinase

CAGCCAGGAACCTGGCACGGACCGCCGCCACCCCGAGCATGTGCGGCTGCGCTACCTGCTGCAGGTGCTGGAGCGGCATCCCGACTGGGCCGGGC  >  AM260479/1257926‑1258020 |                                                                                               cAGCCAGGAACCTGGCACGGACCGCCGCCACCCCGAGCATGTGCGGCTGCGCTACCTGCTGCAGGTGCTGGAGCGGCATCCCGACTGGGCCGGGc  >  1:599561/1‑95 (MQ=255) cAGCCAGGAACCTGGCACGGACCGCCGCCACCCCGAGCATGTGCGGCTGCGCTACCTGCTGCAGGTGCTGGAGCGGCATCCCGACTGGGCCGGGc  <  2:599561/95‑1 (MQ=255) |                                                                                               CAGCCAGGAACCTGGCACGGACCGCCGCCACCCCGAGCATGTGCGGCTGCGCTACCTGCTGCAGGTGCTGGAGCGGCATCCCGACTGGGCCGGGC  >  AM260479/1257926‑1258020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑