Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	2308989	2309008	20	2 [0]	[0] 2	h16_A2123	conserved hypothetical protein

CGATACCCGGCGCGACTACCGCCGCCACTGGACGCCGGTCCACCTCGACTTCGTCG  >  AM260479/2309009‑2309064 |                                                        cGATACCCGGCGCGACTACCGCCGCCACTGGACGCCGGTCCACCTCGACTtcgtcg  >  1:939040/1‑56 (MQ=255) cGATACCCGGCGCGACTACCGCCGCCACTGGACGCCGGTCCACCTCGACTtcgtcg  <  2:939040/56‑1 (MQ=255) |                                                        CGATACCCGGCGCGACTACCGCCGCCACTGGACGCCGGTCCACCTCGACTTCGTCG  >  AM260479/2309009‑2309064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑