Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	3597184	3597222	39	3 [1]	[0] 2	h16_A3326	ABC‑type transporter, duplicated permease domains: TauT family

GGCTTTGACAGCCAGCTGCTGCGCGCCCCGCCCAAC  >  AM260479/3597223‑3597258 |                                    ggCTTTGACAGCCAGCTGCTGCGCGCCCCGCCCAAc  >  1:168769/1‑36 (MQ=255) ggCTTTGACAGCCAGCTGCTGCGCGCCCCGCCCAAc  <  2:168769/36‑1 (MQ=255) |                                    GGCTTTGACAGCCAGCTGCTGCGCGCCCCGCCCAAC  >  AM260479/3597223‑3597258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑