Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	3609125	3609127	3	4 [0]	[0] 2	h16_A3334	conserved hypothetical protein

CTCTCCATCCCCTTCCCCCGCAACCCCACCAGCAGCGCCTGCCCGTCCGCCCCCACG  >  AM260479/3609128‑3609184 |                                                         ctctCCATCCCCTTCCCCCGCAACCCCACCAGCAGCGCCTGCCCGTCCGCCCCCAcg  <  1:76511/57‑1 (MQ=255) ctctCCATCCCCTTCCCCCGCAACCCCACCAGCAGCGCCTGCCCGTCCGCCCCCAcg  >  2:76511/1‑57 (MQ=255) |                                                         CTCTCCATCCCCTTCCCCCGCAACCCCACCAGCAGCGCCTGCCCGTCCGCCCCCACG  >  AM260479/3609128‑3609184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑