Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	4004535	4004578	44	2 [0]	[0] 2	h16_A3710	response regulator, NarL‑family

GACGCTGGGGGATAGCGAGGCGGGATAAAAAAAACGCCCGTCTCGGCAGAGACGGGCGTCTTTATTGCGAACT  >  AM260479/4004579‑4004651 |                                                                         gaCGCTGGGGGATAGCGAGGCGGGATAAAAAAAACGCCCGTCTCGGCAGAGACGGGCGTCTTTATTGCGAACt  <  1:627123/73‑1 (MQ=255) gaCGCTGGGGGATAGCGAGGCGGGATAAAAAAAACGCCCGTCTCGGCAGAGACGGGCGTCTTTATTGCGAACt  >  2:627123/1‑73 (MQ=255) |                                                                         GACGCTGGGGGATAGCGAGGCGGGATAAAAAAAACGCCCGTCTCGGCAGAGACGGGCGTCTTTATTGCGAACT  >  AM260479/4004579‑4004651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑