Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AY305378	85291	85339	49	3 [1]	[0] 2	[hoxI]	[hoxI]

CACTCTCCGCGTCCAGCTGAAATGCAAAAAAGCATATCC  >  AY305378/85340‑85378 |                                       cACTCTCCGCGTCCAGCTGAAATGCAAAAAAGCATATcc  >  1:1185650/1‑39 (MQ=255) cACTCTCCGCGTCCAGCTGAAATGCAAAAAAGCATATcc  <  2:1185650/39‑1 (MQ=255) |                                       CACTCTCCGCGTCCAGCTGAAATGCAAAAAAGCATATCC  >  AY305378/85340‑85378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑