Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AY305378	278071	278081	11	2 [0]	[0] 4	PHG263	conserved hypothetical protein

GGAACGGCACGATCTTGCCGAGCATGGCCGTCACCGGCAGCACGCCGCCGCCGATCAGCGCGAGCGAGCCGATCCACCAGGCCAGCGGTGCCCGACTATCCGG  >  AY305378/278082‑278184 |                                                                                                       ggAACGGCACGATCTTGCCGAGCATGGCCGTCACCGGCAGCACGCCGCCGCCGATCAGCGCGAGCGAGCCGATCCACCAGGCCAGCGGTGCCCGACt        <  1:773512/97‑1 (MQ=255) ggAACGGCACGATCTTGCCGAGCATGGCCGTCACCGGCAGCACGCCGCCGCCGATCAGCGCGAGCGAGCCGATCCACCAGGCCAGCGGTGCCCGACt        >  2:773512/1‑97 (MQ=255) ggAACGGCACGATCTTGCCGAGCATGGCCGTCACCGGCAGCACGCCGCCGCCGATCAGCGCGAGCGAGCCGATCCACCAGGCCAGCGGTGCCCGACTATCCgg  <  1:190522/103‑1 (MQ=255) ggAACGGCACGATCTTGCCGAGCATGGCCGTCACCGGCAGCACGCCGCCGCCGATCAGCGCGAGCGAGCCGATCCACCAGGCCAGCGGTGCCCGACTATCCgg  >  2:190522/1‑103 (MQ=255) |                                                                                                       GGAACGGCACGATCTTGCCGAGCATGGCCGTCACCGGCAGCACGCCGCCGCCGATCAGCGCGAGCGAGCCGATCCACCAGGCCAGCGGTGCCCGACTATCCGG  >  AY305378/278082‑278184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑