Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 3,905,524 G→C A1285G (GCC→GGC)  putA ← bifunctional proline dehydrogenase and proline oxidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604793,905,5240GC100.0% 91.2 / NA 24A1285G (GCC→GGC) putAbifunctional proline dehydrogenase and proline oxidase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (13/11);  total (13/11)

GGTCCGAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTC  >  AM260479/3905397‑3905637
                                                                                                                               |                                                                                                                 
ggTCCGAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCa                                                                                                             <  2:216418/134‑1 (MQ=255)
        ggTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCgatg                                                                                                     <  2:47455/134‑1 (MQ=255)
                cAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGAcc                                                                                             >  2:816921/1‑134 (MQ=255)
                      aTCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGgcg                                                                                       >  2:555259/1‑134 (MQ=255)
                                                                   gAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTcc                                          >  2:958772/1‑134 (MQ=255)
                                                                   gAAAGCGAGCGCTCGATCAGCAAAAGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTg                                                                           <  1:70605/101‑1 (MQ=255)
                                                                   gAAAGCGAGCGCTCGATCAGCAAAAGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTg                                                                           >  2:70605/1‑101 (MQ=255)
                                                                          cgcgcTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCgtggtg                                    >  1:219716/2‑133 (MQ=255)
                                                                           gcgcTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTgca                                  <  1:816921/134‑1 (MQ=255)
                                                                              cTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc                                                                                 <  1:758935/84‑1 (MQ=255)
                                                                              cTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc                                                                                 >  2:758935/1‑84 (MQ=255)
                                                                                 gATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTgg                                                     <  1:7116/109‑1 (MQ=255)
                                                                                 gATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTgg                                                     >  2:7116/1‑109 (MQ=255)
                                                                                   tCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCa                          <  2:832747/134‑1 (MQ=255)
                                                                                     aGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc                                                                                 >  1:526090/1‑77 (MQ=255)
                                                                                     aGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc                                                                                 <  2:526090/77‑1 (MQ=255)
                                                                                                gAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc                                                                                 <  2:1184943/66‑1 (MQ=255)
                                                                                                gAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc                                                                                 >  1:1184943/1‑66 (MQ=255)
                                                                                                gAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGt             >  1:1083150/1‑134 (MQ=255)
                                                                                                            cGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTc  >  2:330121/1‑133 (MQ=255)
                                                                                                                      tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc                                                                                 >  2:321561/1‑44 (MQ=255)
                                                                                                                      tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc                                                                                 <  1:321561/44‑1 (MQ=255)
                                                                                                                           cAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGc                                                                          >  1:156477/1‑46 (MQ=255)
                                                                                                                           cAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGc                                                                          <  2:156477/46‑1 (MQ=255)
                                                                                                                               |                                                                                                                 
GGTCCGAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTC  >  AM260479/3905397‑3905637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: