Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260480 2,737,510 T→G intergenic (‑227/+17) h16_B2423 ← / ← h16_B2424 periplasmic solute binding protein/Hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604802,737,5100TG100.0% 70.1 / NA 19intergenic (‑227/+17)h16_B2423/h16_B2424periplasmic solute binding protein/Hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (10/9);  total (10/9)

ATGGCCAGCGGCCGGCAGGGCAAGCGCGGCGCCCGCGAGGGCGCGCGCCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAACGACAATGGCTTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATGGCGGGCGCCTGGGTGGCGGCGGGCAGCGTGGCAGTGGCCGGGGCCGCGGGCGCCACGGCCATG  >  AM260480/2737398‑2737638
                                                                                                                |                                                                                                                                
aTGGCCAGCGGCCGGCAGGGCAAGCGCGGCGCCCGCGAGGGCGCGCGCCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAggg                                                                                                            <  2:838969/134‑1 (MQ=255)
            cggcAGGGCAAGCGCGGCGCCCGCGAGGGCGCGCGCCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGgcgc                                                                                                <  2:1022538/134‑1 (MQ=255)
                                ccGCGAGGGCGCGCGCCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCa                                                                                                                      <  2:294876/92‑1 (MQ=255)
                                ccGCGAGGGCGCGCGCCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCa                                                                                                                      >  1:294876/1‑92 (MQ=255)
                                     aGGGCGCGCGCCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACg                                                                       >  1:570712/1‑134 (MQ=255)
                                          gcgcgcCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAAt                                                                  <  2:243072/134‑1 (MQ=255)
                                           cgcgcCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATg                                                                 >  1:1177799/1‑134 (MQ=255)
                                                           aCGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATGGCGGGCGCCTGGGTgg                                                 >  1:126726/1‑134 (MQ=255)
                                                              cgcgTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATGGCGGGCGCCTGGGTggcgg                                              <  2:1177799/134‑1 (MQ=255)
                                                                cgTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCa                                                                                                                      <  2:682048/60‑1 (MQ=255)
                                                                cgTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCa                                                                                                                      >  1:682048/1‑60 (MQ=255)
                                                                cgTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATGGCGGGCGCCTGGGTGgcggcg                                            >  2:1084771/1‑134 (MQ=255)
                                                                              gcggGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGa                                                                                                      >  2:389554/1‑62 (MQ=255)
                                                                              gcggGAATCAGGGACGGGAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGa                                                                                                      <  1:389554/62‑1 (MQ=255)
                                                                                             gggAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCcgc                                                                                    >  1:699112/1‑65 (MQ=255)
                                                                                             gggAGTCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCcgc                                                                                    <  2:699112/65‑1 (MQ=255)
                                                                                                  tCAGCGACATGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATGGCGGGCGCCTGGGTGGCGGCGGGCAGCGTGGCAGTGGCCGGGGCCGCGGGCGCCa          >  1:51883/1‑134 (MQ=255)
                                                                                                     agcgacaTGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATGGCGGGCGCCTGGGTGGCGGCGGGCAGCGTGGCAGTGGCCGGGGCCGCGGGCGCCACg        >  1:614325/7‑134 (MQ=255)
                                                                                                           aTGGCGTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATGGCGGGCGCCTGGGTGGCGGCGGGCAGCGTGGCAGTGGCCGGGGCCGCGGGCGCCACGGCCATg  <  2:570712/134‑1 (MQ=255)
                                                                                                                |                                                                                                                                
ATGGCCAGCGGCCGGCAGGGCAAGCGCGGCGCCCGCGAGGGCGCGCGCCAGCCAGCGCCACGCGCGTGTTGCCGCGCGGCGGGAATCAGGGACGGGAGTCAACGACAATGGCTTCAAACGGTTCATGTTTCAGGGAGTCGAGGGCGCGCCTGGAGCCGCGGCAAGGCCAACGGCAATGGCGGGCGCCTGGGTGGCGGCGGGCAGCGTGGCAGTGGCCGGGGCCGCGGGCGCCACGGCCATG  >  AM260480/2737398‑2737638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: