Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 735,524 +G intergenic (‑409/+175) h16_A0685 ← / ← h16_A0686 hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM260479735,5211.G100.0% 82.8 / NA 26intergenic (‑406/+178)h16_A0685/h16_A0686hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (11/15);  total (11/15)

GAGCGACAAAAAGTAACCAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGCGGCATCGCGGGGACGCCTACGGCTGC  >  AM260479/735388‑735614
                                                                                                                                      |                                                                                             
gAGCGACAAAAAGTAACCAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCa                                                                                                <  2:4420/134‑1 (MQ=255)
     aCAAAAAGTAACCAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAgggg                                                                                           >  2:355213/1‑132 (MQ=255)
     aCAAAAAGTAACCAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAgggg                                                                                           >  2:297096/1‑132 (MQ=255)
       aaaaaGTAACCAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAggggcag                                                                                        <  1:297096/134‑5 (MQ=255)
            gTAACCAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCt                                                                                    <  2:670038/134‑1 (MQ=255)
            gTAACCAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCt                                                                                    <  1:355213/134‑1 (MQ=255)
                 cAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGtt                                                                               <  1:1021319/134‑1 (MQ=255)
                 cAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGtt                                                                               <  1:856101/134‑1 (MQ=255)
                      aaCGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAAccc                                                                          <  2:725722/134‑1 (MQ=255)
                              gCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGa                                                                  <  1:825782/134‑1 (MQ=255)
                               ccTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCTCGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCa                                                                                                >  1:685838/1‑103 (MQ=255)
                               ccTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCTCGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCa                                                                                                <  2:685838/103‑1 (MQ=255)
                                              atcaatTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGtt                                                                               <  2:381924/105‑1 (MQ=255)
                                              atcaatTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGtt                                                                               >  1:381924/1‑105 (MQ=255)
                                                                 tggtTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTAtt                                                                    <  1:44725/97‑1 (MQ=255)
                                                                 tggtTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTAtt                                                                    >  2:44725/1‑97 (MQ=255)
                                                                  ggtTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTGAggggca                                                                                         >  1:230504/1‑71 (MQ=255)
                                                                  ggtTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAggggca                                                                                         <  2:230504/74‑4 (MQ=21)
                                                                         aCGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTAtt                                                                    >  1:1018543/1‑89 (MQ=255)
                                                                         aCGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTAtt                                                                    <  1:622717/89‑1 (MQ=255)
                                                                         aCGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTAtt                                                                    >  2:622717/1‑89 (MQ=255)
                                                                         aCGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTAtt                                                                    <  2:1018543/89‑1 (MQ=255)
                                                                                 gCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGCGGCATCGCGGGGa               >  1:318779/1‑134 (MQ=255)
                                                                                         ttCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAggggc                                                                                          <  2:117512/50‑3 (MQ=255)
                                                                                         ttCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAggggc                                                                                          >  1:117512/1‑48 (MQ=255)
                                                                                           ccGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGc                            <  2:125350/111‑1 (MQ=255)
                                                                                           ccGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGc                            >  1:125350/1‑111 (MQ=255)
                                                                                           ccGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGCGGCATcg                     <  2:171532/118‑1 (MQ=255)
                                                                                           ccGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGCGGCATcg                     >  1:171532/1‑118 (MQ=255)
                                                                                              gCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGCGGCATCGCGGGGACGCCTACGgctgc  >  1:61547/1‑134 (MQ=255)
                                                                                                     tGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCt                                                                                    <  1:632327/45‑1 (MQ=1)
                                                                                                     tGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCt                                                                                    >  2:632327/1‑45 (MQ=1)
                                                                                                               aCCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTAtt                                                                    >  2:563675/1‑51 (MQ=11)
                                                                                                               aCCCTGCTACGCCATGTGAGTCAGGGGCAGTGCCTGCGTTAACCCACTAtt                                                                    <  1:563675/51‑1 (MQ=11)
                                                                                                                                 aGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGCGGCATCGCGGGGACGCCTACGgctgc  <  2:28432/99‑1 (MQ=255)
                                                                                                                                 aGTCAGGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGCGGCATCGCGGGGACGCCTACGgctgc  >  1:28432/1‑99 (MQ=255)
                                                                                                                                      |                                                                                             
GAGCGACAAAAAGTAACCAAAAAACGCGTCGCCTGAGCGGCCGGCAATCAATTCCAGGGTGTTGGTGGTTCGCACGGTGGTGCTTGCCGTTCCGGCGTGGTTGCCCGTTCGACCCTGCTACGCCATGTGAGTCAGGGCAGTGCCTGCGTTAACCCACTATTGAACGATCCCCATGCAGGGCGCAGGCCGCCTGCTGCGAGCGGCATCGCGGGGACGCCTACGGCTGC  >  AM260479/735388‑735614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: