| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 203141 = | 23 (0.780) | 5 (0.180) | 5/204 | 2.0 | 21.8% | coding (1119/1413 nt) | h16_B0179 | Hemagglutinin‑related transmembrane protein |
| ? | AM260480 | 203228 = | 14 (0.500) | coding (1032/1413 nt) | h16_B0179 | Hemagglutinin‑related transmembrane protein | |||||
GTACGGGTTCGCCGCTGGCGCCTGTCACCAGCCTGGTCAGCAGCATCACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/203193‑203141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcCAGCGCAGTCACGGGTGCCAGTACCGGGCTCAGCGCGCCCAGGCCGCCGCCGCTGGCGGGCCCGTTCACTGCGCCGCCCAGCGAAGCCACGGTCGTGCCGGTGGCGTTCAC > AM260480/203228‑203338 GTACGGGTTCGCCGCTGGCGCCTGTCACCAGCCTGGTCAGCAGCATCAC < 1:367012/49‑1GTACGGGTTCGCCGCTGGCGCCTGTCACCAGCCTGGTCAGCAGCATCAC > 2:367012/1‑49 CTGTCACCAGCCTGGTCAGCAGCATCACCGGCCAGCGCAGTCACGGGTGCCAGTACCGGGCTCAGCGCGCCCAGGCCGCCGCCGCTGGCGGGCCCGTTCACTGCGCCGCCCAGCGAAGCCACGGTCGTGCCGGT > 1:896321/1‑134 CAGCAGCATCACCGGCCAGCGCAGTCACGGGTGCCA < 1:715559/36‑1 CAGCAGCATCACCGGCCAGCGCAGTCACGGGTGCCA > 2:715559/1‑36 GCAGCATCACCGGCCAGCGCAGTCACGGGTGCCAGTACCGGGCTCAGCGCGCCCAGGCCGCCGCCGCTGGCGGGCCCGTTCACTGCGCCGCCCAGCGAAGCCACGGTCGTGCCGGTGGCGTTCAC < 1:384817/125‑1 GCAGCATCACCGGCCAGCGCAGTCACGGGTGCCAGTACCGGGCTCAGCGCGCCCAGGCCGCCGCCGCTGGCGGGCCCGTTCACTGCGCCGCCCAGCGAAGCCACGGTCGTGCCGGTGGCGTTCAC > 2:384817/1‑125 CCGGCCAGCGCAGTCACGGGTGCCAGTACCGGGCTCAGCGCGCCCAGGCCGCCGCCGCTGGCGGGCCCGTTCACTGCGCCGCC < 1:981349/83‑1 CCGGCCAGCGCAGTCACGGGTGCCAGTACCGGGCTCAGCGCGCCCAGGCCGCCGCCGCTGGCGGGCCCGTTCACTGCGCCGCC > 2:981349/1‑83 GTACGGGTTCGCCGCTGGCGCCTGTCACCAGCCTGGTCAGCAGCATCACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/203193‑203141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcCAGCGCAGTCACGGGTGCCAGTACCGGGCTCAGCGCGCCCAGGCCGCCGCCGCTGGCGGGCCCGTTCACTGCGCCGCCCAGCGAAGCCACGGTCGTGCCGGTGGCGTTCAC > AM260480/203228‑203338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |