New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 344621	35 (1.190)	9 (0.370)	8/178	1.2	25.7%	coding (922/984 nt)	h16_B0308	transcriptional regulator, AraC‑family
	?	AM260480	= 344603	23 (0.940)					coding (904/984 nt)	h16_B0308	transcriptional regulator, AraC‑family

GCGAACACAGCCTGCAGGAATACGCGGAACAATGCCTGTGCACGACCAACTGGCCGGTAGGAAGAATCGCGGAGCAGCTTGGCTTTGCCAGCGAGGAAGCGTTTCGCCGGGCGTTCCAGCGCTGGAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/344493‑344621 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttccagcgctggaacgCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGTGCACAGGCATTGTTCCGCGTATTCCTGCAGGCTGTGTTCGC  <  AM260480/344603‑344493                                                                                                                                                                                                                                                  GCGAACACAGCCTGCAGGAATACGCGGAACAATGCCTGTGCACGACCAACTGGCCGGTAGGAAGAATCGCGGAGCAGCTTGGCTTTGCCAGCGAGGAAGCGTTTCGCCGGGCGTTCCAGCGCTGGAAAGCC                                                                                                               >  1:525082/1‑131                                                          TAGGAAGAATCGCGGAGCAGCTTGGCTTTGCCAGCGAGGAAGCGTTTCGCCGGGCGTTCCAGCGCTGGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAG                                                   >  1:889263/1‑134                                                                            AGCTTGGCTTTGCCAGCGAGGAAGCGTTTCGCCGGGCGTTCCAGCGCTGGAACGCCCG                                                                                                             <  2:21301/58‑1                                                                               TTGGCTTTGCCAGCGAGGAAGCGTTTCGCCGGGCGTTCCAGCGCTGGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGTGCACAGGCATTGT                              >  2:141625/1‑134                                                                                     TTGCCAGCGAGGAAGCGTTTCGCCGGGCGTTCCAGCGCTGGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGT                                           >  1:251174/1‑115                                                                                     TTGCCAGCGAGGAAGCGTTTCGCCGGGCGTTCCAGCGCTGGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGT                                           <  2:251174/115‑1                                                                                                         CGCCGGGCGTTCCAGCGCTGGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGTGCACAGGCATTGTTCCGCGTATTCCTGCAGGCTGTGTT     <  1:141625/133‑1                                                                                                            CGGGCGTTCCAGCGCTGGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCT                                                                             <  1:21301/58‑1                                                                                                              GGCGTTCCAGCGCTGGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGTGCACAGGCATTGTTCCGCGTATTCCTGCAGGCTGTGTTCGC  >  2:525082/1‑131                                                                                                                            GGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGTGCACAGGCATTGTTCCGCGTATTCCTGCAGGCTGTGTT     <  1:844233/114‑1                                                                                                                            GGAACGCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGTGCACAGGCATTGTTCCGCGTATTCCTGCAGGCTGTGTT     >  2:844233/1‑114                                                                                                                                                                                                                                                  GCGAACACAGCCTGCAGGAATACGCGGAACAATGCCTGTGCACGACCAACTGGCCGGTAGGAAGAATCGCGGAGCAGCTTGGCTTTGCCAGCGAGGAAGCGTTTCGCCGGGCGTTCCAGCGCTGGAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/344493‑344621 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttccagcgctggaacgCCCGGCGAAACGCTTCCTCGCTGGCAAAGCCAAGCTGCTCCGCGATTCTTCCTACCGGCCAGTTGGTCGTGCACAGGCATTGTTCCGCGTATTCCTGCAGGCTGTGTTCGC  <  AM260480/344603‑344493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.