New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AY305378	= 449275	13 (0.690)	4 (0.230)	4/200	1.4	25.7%	coding (1249/1461 nt)	cbbLp	ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit
	?	AY305378	= 449286	11 (0.620)					coding (1238/1461 nt)	cbbLp	ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit

ATCGAGCGCAGCCCGCAGCGGTCCGCACCAGCGCGCGGCATCGCGCAGGATCTCCGGCCCTTCATTGAGGATGTCGCGGCCTTCGTTGCGCGCCAGCACCATCGCTTCCAGCGCCACGCGGTTGGCCGTAGCACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AY305378/449138‑449275 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacccgcAAGGGATCCAGGCGGGTGCTACGGCCAACCGCGTGGCGCTGGAAGCGATGGTGCTGGCGCGCAACGAAGGCCGCGACATCCTCAATGAAGGGCCGGAGATCCTGCGCGATGCCG  <  AY305378/449286‑449173                                                                                                                                                                                                                                                              ATCGAGCGCAGCCCGCAGCGGTCCGCACCAGCGCGCGGCATCGCGCAGGATCTCCGGCCCTTCATTGAGGATGTCGCGGCCTTCGTTGCGCGCCAGCACCATCGCTTCCAGCGCCACGCGGTTGGCCGTAGCAC                                                                                                                        >  1:35818/1‑134    GAGCGCAGCCCGCAGCGGTCCGCACCAGCGCGCGGCATCGCGCAGGATCTCCGGCCCTTCATTGAGGATGTCGCGGCCTTCGTTGCGCGCCAGCACCATCGCTTCCAGCGCCACGCGGTTGGCCGTAGCACCCG                                                                                                                     <  2:35818/134‑1                                                                             CGGCCTTCGTTGCGCGCCAGCACCATCGCTTCCAGCGCCACGCGGTTGGCCGTAGCACCCGCAAGGGATCCAGGCGGGTGCTACGGCCAACCGCGTGGCG                                                                              <  1:219011/100‑1                                                                             CGGCCTTCGTTGCGCGCCAGCACCATCGCTTCCAGCGCCACGCGGTTGGCCGTAGCACCCGCAAGGGATCCAGGCGGGTGCTACGGCCAACCGCGTGGCG                                                                              >  2:219011/1‑100                                                                                                  ACCATCGCTTCCAGCGCCACGCGGTTGGCCGTAGCACCCGCAAGGGATCCAGGCGGGTGCTACGGCCAACCGCGTGGCGCTGGAAGCGATGGTGCTGGCGCGCAACGAAGGCCGCGACATCCTCAATGAAGGGC                       >  2:73765/1‑134                                                                                                                       CGGTTGGCCGTAGCACCCGCAAGGGATCCAGGCGGGTGCTACGGCCAACCGCGTGGCGCTGGAAGCGATGGTGCTGGCGCGCAACGAAGGCCGCGACATCCTCAATGAAGGGCCGGAGATCCTGCGCGATGCCG  <  1:73765/134‑1                                                                                                                                                                                                                                                              ATCGAGCGCAGCCCGCAGCGGTCCGCACCAGCGCGCGGCATCGCGCAGGATCTCCGGCCCTTCATTGAGGATGTCGCGGCCTTCGTTGCGCGCCAGCACCATCGCTTCCAGCGCCACGCGGTTGGCCGTAGCACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AY305378/449138‑449275 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacccgcAAGGGATCCAGGCGGGTGCTACGGCCAACCGCGTGGCGCTGGAAGCGATGGTGCTGGCGCGCAACGAAGGCCGCGACATCCTCAATGAAGGGCCGGAGATCCTGCGCGATGCCG  <  AY305378/449286‑449173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.