| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 453,152 | 0 | G | A | 38.5% | 4.4 / 10.7 | 13 | G333G (GGC→GGT) | coxF | xanthine and CO dehydrogenase, maturation factor |
| Reads supporting (aligned to +/- strand): ref base G (2/6); new base A (2/3); total (4/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATGTCGGGCAGCGATACGTGGTTCCTGGCCGCGATCACCTCGGCCAGGATCGAGATGGCGATCTCGGGCGGCGTGCGGCTGCCGAT > AM260479/453034‑453283 | cagcagGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTcg < 2:122331/134‑1 (MQ=255) gATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCtgccggtg < 2:968822/113‑1 (MQ=255) gATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCtgccggtg > 1:968822/1‑113 (MQ=255) ccGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTCGCGTGCGGcc < 2:478595/133‑1 (MQ=255) aGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCtt < 1:257117/134‑1 (MQ=255) ggTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCAc < 1:534552/133‑1 (MQ=255) ggggAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGCACCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATGTc < 1:78894/134‑1 (MQ=255) gggggCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATGTCGGGCAGCGa > 1:536606/1‑133 (MQ=255) cggcAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGCACCGGCAGCCATCTCGCGTGCGGcc < 1:276598/93‑1 (MQ=255) cggcAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGCACCGGCAGCCATCTCGCGTGCGGcc > 2:276598/1‑93 (MQ=255) ggCGCGACGTCGCAGCTGCTGCCGGCACCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATg > 1:1010036/1‑75 (MQ=255) ggCGCGACGTCGCAGCTGCTGCCGGCACCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATg < 2:1010036/75‑1 (MQ=255) gACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTg > 1:504380/1‑63 (MQ=255) gACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTg < 2:504380/63‑1 (MQ=255) ctgcCGGTGCCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATGTCGGGCAGCGATACGTGGTTCCTGGCCGCGATCACCTCGGCCAGGATCGAGATGGCGATCTCGGGCGGCGTGCGGCt < 2:979610/134‑1 (MQ=255) tgccggtgccggCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATGTCGGGCAGCGATACGTGGTTCCTGGCCGCGATCACCTCGGCCAGGATCGAGATGGCGATCTCGGGCGGCGTGCGGCTg > 1:945068/1‑134 (MQ=255) gtgccggCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATGTCGGGCAGCGATACGTGGTTCCTGGCCGCGATCACCTCGGCCAGGATCGAGATGGCGATCTCGGGCGGCGTGCGGCTGCCGAt > 1:296177/1‑134 (MQ=255) gtgccggCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATGTCGGGCAGCGATACGTGGTTCCTGGCCGCGATCACCTCGGCCAGGATCGAGATGGCGATCTCGGGCGGCGTGCGGCTGCCGAt > 1:1068918/1‑134 (MQ=255) | CAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGATCGGGCGCGACGTCGCAGCTGCTGCCGGTGCCGGCAGCCATCTCGCGTGCGGCCTTGGCGCCTTCCACCTGCAGGATGTCGGGCAGCGATACGTGGTTCCTGGCCGCGATCACCTCGGCCAGGATCGAGATGGCGATCTCGGGCGGCGTGCGGCTGCCGAT > AM260479/453034‑453283 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |