| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260480 | 274,470 | (G)10→9 | intergenic (+18/‑626) | h16_B0246 → / → fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260480 | 274,461 | 0 | G | . | 100.0% | 125.1 / NA | 28 | intergenic (+9/‑635) | h16_B0246/fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (15/13); total (15/13) | |||||||||||
CTTGCTTTCCCTCGCGGCCTGGCTGGCGCATGAGACGCAGGTGTTGAGTGAGCTGGCCGTGCTGCAGGGTCAGGTATTGCAGACTGACTGACGTTTAGCGGGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCATCACGCCGAGTCGGGCGCAGGCGAGAC > AM260480/274362‑274587 | cttgcttTCCCTCGCGGCCTGGCTGGCGCATGAGACGCAGGTGTTGAGTGAGCTGGCCGTGCTGCAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCgcgcgc > 2:547314/1‑134 (MQ=255) tgcttTCCCTCGCGGCCTGGCTGGCGCATGAGACGCAGGTGTTGAGTGAGCTGGCCGTGCTGCAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCt > 2:415111/1‑123 (MQ=255) tgcttTCCCTCGCGGCCTGGCTGGCGCATGAGACGCAGGTGTTGAGTGAGCTGGCCGTGCTGCAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCt < 1:415111/123‑1 (MQ=255) cccTCGCGGCCTGGCTGGCGCATGAGACGCAGGTGTTGAGTGAGCTGGCCGTGCTGCAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCt > 2:726184/1‑117 (MQ=255) cccTCGCGGCCTGGCTGGCGCATGAGACGCAGGTGTTGAGTGAGCTGGCCGTGCTGCAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCt < 1:726184/117‑1 (MQ=255) gCCGTGCTGCAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCG‑TTTCAAAGCGGTTGAACCACACGGCa < 1:547314/133‑1 (MQ=255) ctgcAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATC‑GCTGCCGCGCGTCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGAc < 2:966748/132‑1 (MQ=255) ctgcAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATC‑GCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGAc > 1:966748/1‑132 (MQ=255) tgcAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGa > 2:120913/1‑116 (MQ=255) tgcAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGa < 1:120913/116‑1 (MQ=255) cAGGGTCAGGTATTGCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCa > 2:603049/1‑134 (MQ=255) gCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCATCACGCCGAGTCgg > 1:103358/1‑134 (MQ=255) gCAGACTGACTGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCATCACGCCGAGTCg < 1:603049/133‑1 (MQ=255) gactgactGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGa > 1:682220/1‑97 (MQ=255) gactgactGACGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGa < 2:682220/97‑1 (MQ=255) ctgactgaCGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCATCACGCCGAGTCGGgcg > 2:913231/1‑132 (MQ=255) tgacGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCctcctc > 1:114474/1‑52 (MQ=255) tgacGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCctcctc < 2:114474/52‑1 (MQ=255) tgacGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCacac > 1:806271/1‑97 (MQ=255) tgacGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCacac < 2:806271/97‑1 (MQ=255) tgacGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACgg > 2:183250/1‑99 (MQ=255) tgacGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACgg < 1:183250/99‑1 (MQ=255) tgacGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCATCACGcc < 2:307274/117‑1 (MQ=255) tgacGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCATCACGcc > 1:307274/1‑117 (MQ=255) acGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGAtt < 2:816813/75‑1 (MQ=255) acGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGAtt > 1:816813/1‑75 (MQ=255) acGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCATCACGCCGAGTCGGGCGCAGGCgaga > 1:880821/1‑134 (MQ=255) cGTTTAGC‑GGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCTGTTGAACCACACGGCAAAGACGCCATCACGCCGAGTCGGGCGCAGGCGAGAc < 1:688066/134‑1 (MQ=255) | CTTGCTTTCCCTCGCGGCCTGGCTGGCGCATGAGACGCAGGTGTTGAGTGAGCTGGCCGTGCTGCAGGGTCAGGTATTGCAGACTGACTGACGTTTAGCGGGGGGGGGGCAGCCGTGCAATCGGCTGCCGCGCGCCTCCTCGGCGCGCAGGTCAACTTCCCCGATTTCAAAGCGGTTGAACCACACGGCAAAGACGCCATCACGCCGAGTCGGGCGCAGGCGAGAC > AM260480/274362‑274587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |