Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 1,191,771 Δ1 bp coding (5/390 nt) h16_A1095 ← Hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604791,191,7690C.100.0% 48.4 / NA 12coding (7/390 nt)h16_A1095Hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (7/5);  total (7/5)

GCGCGCGGCTTCTTCCTGCACCGCCATGGCCAGCGTTGGCGGCGCGGCGAAGGGCAGGACCGCCGCGCCGGCCCGCTGGCGATCCTCCTCCTGTTGTGCCCGCACGTGCGGCCGCGTGCACCGACTCTGCCAGCGCAGCGGACGGCGCGTAAGCGGGCAGCTCCCGCAGCAGCGCCGAAAGCCGGTCCTTGCCGTCGATAAAGCGGTCGGCCGCGTTCA  >  AM260479/1191671‑1191889
                                                                                                  |                                                                                                                        
gcgcgcGGCTTCTTCCTGCACCGCCATGGCCAGCGTTGGCGGCGCGGCGAAGGGCAGGACCGCCGCGCCGGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCACCGACTCTGCcagcg                                                                                      >  2:376386/1‑134 (MQ=255)
   cgcgGCTTCTTCCTGCACCGCCATGGCCAGCGTTGGCGGCGCGGCGAAGGGCAGGACCGCCGCGCCGGCCCTCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCACCGACTCTGCcagcgcag                                                                                   <  1:376386/134‑1 (MQ=255)
       gCTTCTTCCTGCACCGCCATGGCCAGCGTTGGCGGCGCGGCGAAGGGCAGGACCGCCGCGCCGGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCACCGACTCTGCCAGCGCAGCGGa                                                                               >  1:119351/1‑134 (MQ=255)
                              cAGCGTTGGCGGCGCGGCGAAGGGCAGGACCGCCGCGCCGGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCg                                                                                                               <  1:41040/79‑1 (MQ=255)
                              cAGCGTTGGCGGCGCGGCGAAGGGCAGGACCGCCGCGCCGGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCg                                                                                                               >  2:41040/1‑79 (MQ=255)
                                                           ccgccgCGCCGGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCACCGACTCTGCCAGCGCAGCGGACGGCGCGTAAGCGGGCAGCTCCCGCAGCAGCGCCGa                                           >  1:602213/1‑118 (MQ=255)
                                                           ccgccgCGCCGGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCACCGACTCTGCCAGCGCAGCGGACGGCGCGTAAGCGGGCAGCTCCCGCAGCAGCGCCGa                                           <  2:602213/118‑1 (MQ=255)
                                                                  gccgGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCa                                                                                                     >  1:1002223/1‑53 (MQ=255)
                                                                  gccgGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCa                                                                                                     <  2:1002223/53‑1 (MQ=255)
                                                                  gccgGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCACCGACTCTGCcagcgcag                                                                                   <  1:952292/71‑1 (MQ=255)
                                                                  gccgGCCCGCTGGCGATCCTCCTCCTGTTGTGCCGCACGTGCGGCCGCGTGCACCGACTCTGCcagcgcag                                                                                   >  2:952292/1‑71 (MQ=255)
                                                                                    ctcctcctGTTGTGCCGCACGTGCGGCCGCGTGCACCGACTCTGCCAGCGCAGCGGACGGCGCGTAAGCGGGCAGCTCCCGCAGCAGCGCCGAAAGCCGGTCCTTGCCGTCGATAAAGCGGTCGGCCGCGTTCa  >  2:245363/1‑134 (MQ=255)
                                                                                                  |                                                                                                                        
GCGCGCGGCTTCTTCCTGCACCGCCATGGCCAGCGTTGGCGGCGCGGCGAAGGGCAGGACCGCCGCGCCGGCCCGCTGGCGATCCTCCTCCTGTTGTGCCCGCACGTGCGGCCGCGTGCACCGACTCTGCCAGCGCAGCGGACGGCGCGTAAGCGGGCAGCTCCCGCAGCAGCGCCGAAAGCCGGTCCTTGCCGTCGATAAAGCGGTCGGCCGCGTTCA  >  AM260479/1191671‑1191889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: