Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 1,231,142 Δ1 bp coding (2631/2652 nt) glnE → glutamine synthetase adenylyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604791,231,1410A.85.7% 15.6 / ‑1.1 7coding (2630/2652 nt)glnEglutamine synthetase adenylyltransferase
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base . (3/3);  total (4/3)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01

AAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGGTGCAGTACCTGGTGCTGCTGCACAACCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCACCGCTGGCACTGGCGGTGGGCGAT  >  AM260479/1231032‑1231250
                                                                                                             |                                                                                                             
aaGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGcacagcc                                                                                                            <  1:211679/112‑4 (MQ=255)
aaGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGcc                                                                                                            >  2:211679/1‑112 (MQ=255)
aaGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGAcgcg                                                                                     >  1:361634/1‑134 (MQ=255)
                                ccTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAg                                                    <  2:361634/134‑1 (MQ=255)
                                             aaGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGc                                                                                               <  1:748555/79‑1 (MQ=255)
                                             aaGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGc                                                                                               >  2:748555/1‑79 (MQ=255)
                                                                                               tGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGAt  <  1:1017945/122‑1 (MQ=255)
                                                                                               tGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGAt  >  2:1017945/1‑122 (MQ=255)
                                                                                                             |                                                                                                             
AAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGGTGCAGTACCTGGTGCTGCTGCACAACCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCACCGCTGGCACTGGCGGTGGGCGAT  >  AM260479/1231032‑1231250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: