Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 3,529,526 +G intergenic (‑40/‑264) secA ← / → h16_A3265 preprotein translocase subunit SecA/Hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604793,529,5241.G100.0% 42.4 / NA 12intergenic (‑38/‑266)secA/h16_A3265preprotein translocase subunit SecA/Hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (6/6);  total (6/6)

ATCAGCCGCTCATTGCGGCTGCCGAAGACTTTCTTGAGAAGGCCGGTGATCATCGATTGCTTTCACCTGCGCGGAACCGGGCGGCACCCCAGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCAAAACGCCGAGTTTATCATGTGCCGGGGTCACGGCGGAACGCGCCTGGCCCCGTCCCGCAAGGG  >  AM260479/3529434‑3529636
                                                                                           |                                                                                                                 
aTCAGCCGCTCATTGCGGCTGCCGAAGACTTTCTTGAGAAGGCCGGTGATCATCGATTGCTTTCACCTGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGAt                                                                         >  1:609882/1‑134 (MQ=255)
           aTTGCGGCTGCCGAAGACTTTCTTGAGAAGGCCGGTGATCATCGATTGCTTTCACCTGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCaaa                                                                <  2:609882/132‑1 (MQ=255)
               cGGCTGCCGAAGACTTTCTTGAGAAGGCCGGTGATCATCGATTGCTTTCACCTGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCAAAACGcc                                                           <  1:467484/133‑1 (MQ=255)
                                 ttGAGAAGGCCGGTGATCATCGATTGCTTTCACCTGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCAAAACGCCGAGTTTATCATGTGCCggg                                        >  2:687452/1‑134 (MQ=255)
                                   gagaAGGCCGGTGATCATCGATTGCTTTCACCTGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCAAAACGCCGAGTTTATCATGTGCCggg                                        <  1:687452/132‑1 (MQ=255)
                                   gagaAGGCCGGTGATCATCGATTGCTTTCACCTGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCAAAACGCCGAGTTTATCATGTGCCggg                                        <  2:459106/132‑1 (MQ=255)
                                                              tCACCTGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCaa                                                                 >  1:55039/1‑80 (MQ=255)
                                                              tCACCTGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCaa                                                                 <  2:55039/80‑1 (MQ=255)
                                                                   tGCGCGGAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCAAAACGCCGAGTTTATCATGTGCCGGGGTCACGGCCGGAACGCGCCTGGCCCCGTCCCGc       >  2:300407/1‑133 (MQ=255)
                                                                         gAACCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCAAAACGCCGAGTTTATCATGTGCCGGGGTCACGGCCGGAACGCGCCTGGCCCCGTCCCGCAAggg  >  2:246448/1‑132 (MQ=255)
                                                                           aCCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGcc                                                                                            >  1:56650/1‑40 (MQ=255)
                                                                           aCCGGGCGGCACCCCAGGGATGCGGGCTGCTCCGGCGGcc                                                                                            <  2:56650/40‑1 (MQ=38)
                                                                                           |                                                                                                                 
ATCAGCCGCTCATTGCGGCTGCCGAAGACTTTCTTGAGAAGGCCGGTGATCATCGATTGCTTTCACCTGCGCGGAACCGGGCGGCACCCCAGGATGCGGGCTGCTCCGGCGGCCGGGCGAGGAATGGATAGATTGGCGCAAAACGCCGAGTTTATCATGTGCCGGGGTCACGGCGGAACGCGCCTGGCCCCGTCCCGCAAGGG  >  AM260479/3529434‑3529636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: