| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260480 | 159,389 | +G | intergenic (‑21/‑334) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260480 | 159,388 | 1 | . | G | 100.0% | 96.2 / NA | 29 | intergenic (‑20/‑335) | h16_B0138/h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (13/16); total (13/16) | |||||||||||
AGCGCCGGTTGCACCACCTCGGCCGGCGAAAACGTCTTGCGCATCACTTGTCCCAGCTCGAACCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTT‑GCGGCAAA‑GTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTGAAGTGGGTCAACAGCGCCAGGGCGCCGTCCAGGGTCTTG > AM260480/159265‑159514 | aGCGCCGGTTGCACCACCTCGGCCGGCGAAAACGTCTTGCGCATCACTTGTCCCAGCTCGAACCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAg < 1:104188/134‑1 (MQ=255)aGCGCCGGTTGCACCACCTCGGCCGGCGAAAACGTCTTGCGCATCACTTGTCCCAGCTCGAACCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAg < 1:761440/134‑1 (MQ=255) cGGTTGCACCACCTCGGCCGGCGAAAACGTCTTGCGCATCACTTGTCCCAGCTCGAACCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAgcgcgc < 2:639375/134‑1 (MQ=255) gCACCACCTCGGCCGGCGAAAACGTCTTGCGCATCACTTGTCCCAGCTCGAACCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTg < 2:271530/133‑1 (MQ=255) tGTCCCAGCTCGAACCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTc > 1:783820/1‑134 (MQ=255) gTCCCAGCTCGAACCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGtt < 2:633372/132‑1 (MQ=255) aaCCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCgtgg > 1:816551/1‑96 (MQ=21) aaCCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCgtgg < 2:816551/96‑1 (MQ=21) aaCCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGccc > 1:406860/1‑132 (MQ=255) aGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTg < 1:281239/79‑1 (MQ=21) aGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTg > 2:281239/1‑79 (MQ=21) aGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAgctg > 1:505316/1‑134 (MQ=255) aGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAgctg > 1:383815/1‑134 (MQ=255) aGCGCAA‑CCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGcccc < 2:794734/128‑1 (MQ=21) aGCGCAA‑CCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGcccc > 1:794734/1‑128 (MQ=21) aCCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAgctgggctgg < 2:783820/134‑1 (MQ=255) gTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTg > 1:739585/1‑133 (MQ=255) gCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTGAAg < 2:406860/133‑1 (MQ=255) ggCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAg > 1:152161/1‑49 (MQ=11) ggCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAg < 2:152161/49‑1 (MQ=11) ggCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTggcg < 2:297066/121‑1 (MQ=255) ggCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTggcg > 1:297066/1‑121 (MQ=255) gCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGtt < 2:709295/95‑1 (MQ=17) gCCAAGCGCGTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGtt > 1:709295/1‑95 (MQ=17) gcgTCCTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTGAAGTGGGTCAACAg > 2:795561/1‑134 (MQ=255) cTGCACCAGGAAGCCGTTGGCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTGAAGTGGGTCAACAGCGcc < 2:739585/133‑1 (MQ=255) ggCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTGAAGTGGGTCAACAGCGCCAGGGCGCCg < 2:636834/123‑1 (MQ=255) ggCGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTGAAGTGGGTCAACAGCGCCAGGGCGCCg > 1:636834/2‑124 (MQ=255) cGGCAAAGGTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTGAAGTGGGTCAACAGCGCCAGGGCGCCGTCCAGGGTCTTg < 1:795561/134‑1 (MQ=255) | AGCGCCGGTTGCACCACCTCGGCCGGCGAAAACGTCTTGCGCATCACTTGTCCCAGCTCGAACCAGCGCAACCCCAGGCCGTAGCGGCCAAGCGCGTCCTGCACCAGGAAGCCGTT‑GCGGCAAA‑GTCGCCAGCGCGCGGTGCACCACGGCGTGGTGCACGCCGCTGTAGCGCGCCAGTTCGCGCACGCCCCAGCTGGGCTGGCGGGCGGTGAAGTGGGTCAACAGCGCCAGGGCGCCGTCCAGGGTCTTG > AM260480/159265‑159514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |