Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260480 2,135,859 +C intergenic (‑237/‑97) h16_B1889 ← / → h16_B1890 transcriptional regulator, IclR‑family/APC transporter, AAT family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604802,135,8571.C100.0% 160.6 / NA 41intergenic (‑235/‑99)h16_B1889/h16_B1890transcriptional regulator, IclR‑family/APC transporter, AAT family
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (20/21);  total (20/21)

AAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGG  >  AM260480/2135724‑2135984
                                                                                                                                      |                                                                                                                               
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  <  1:632898/134‑1 (MQ=255)
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  <  1:585615/134‑1 (MQ=255)
                  aCTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCg                                                                                                                 >  2:352146/1‑133 (MQ=255)
                             cAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGt                                                                                                     <  1:352146/134‑1 (MQ=255)
                                    tAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcct                                                                                              >  2:757068/1‑134 (MQ=255)
                                              ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActgccctg                                                                                                                            >  1:1058691/1‑90 (MQ=255)
                                              ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActgccctg                                                                                                                            <  2:1058691/93‑4 (MQ=255)
                                              ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg                                                                                                    <  1:791995/118‑1 (MQ=255)
                                              ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg                                                                                                    >  2:791995/1‑118 (MQ=255)
                                              ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACg                                                                                    >  2:845339/1‑134 (MQ=255)
                                               cGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGc                                                                                   <  2:301997/134‑1 (MQ=255)
                                                          cGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTg                                                                        >  1:30539/1‑134 (MQ=255)
                                                            aCATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGgc                                                                                                  >  1:359392/1‑106 (MQ=255)
                                                            aCATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGgc                                                                                                  <  2:359392/106‑1 (MQ=255)
                                                                       tAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActgccctg                                                                                                                            <  1:178386/68‑4 (MQ=255)
                                                                       tAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActgccctg                                                                                                                            >  2:178386/1‑65 (MQ=255)
                                                                          gCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  <  2:370357/60‑1 (MQ=255)
                                                                          gCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  >  1:370357/1‑60 (MQ=255)
                                                                          gCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg                                                                                                    >  1:83809/1‑90 (MQ=255)
                                                                          gCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg                                                                                                    <  2:83809/90‑1 (MQ=255)
                                                                          gCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCa                                                                 >  1:557146/1‑125 (MQ=255)
                                                                          gCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCa                                                                 <  2:557146/125‑1 (MQ=255)
                                                                            cATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  <  1:220737/58‑1 (MQ=255)
                                                                            cATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  >  2:220737/1‑58 (MQ=255)
                                                                              tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTg                                                                            <  2:990465/110‑1 (MQ=255)
                                                                              tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTg                                                                            >  1:990465/1‑110 (MQ=255)
                                                                               ccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTa                                                                                        <  1:356247/97‑1 (MQ=255)
                                                                               ccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTa                                                                                        >  2:356247/1‑97 (MQ=255)
                                                                                 ctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAgcg                                                 <  1:757068/134‑1 (MQ=255)
                                                                                   ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg                                                                                             >  1:191282/1‑88 (MQ=255)
                                                                                   ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg                                                                                             <  2:191282/88‑1 (MQ=255)
                                                                                    cccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAacgc                                                <  1:563102/132‑1 (MQ=255)
                                                                                      cGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCgcagca                                            <  1:845339/134‑1 (MQ=255)
                                                                                        ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  >  1:124058/1‑46 (MQ=255)
                                                                                        ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  >  2:829626/1‑46 (MQ=255)
                                                                                        ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  <  2:124058/46‑1 (MQ=255)
                                                                                        ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  <  1:829626/46‑1 (MQ=255)
                                                                                                aaTACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  <  1:62292/38‑1 (MQ=255)
                                                                                                aaTACTGAACGACCACGGCCCCAGGCTGGCAATTActg                                                                                                                                  >  2:62292/1‑38 (MQ=255)
                                                                                                  tACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg                                                                                                    >  2:1038110/1‑66 (MQ=255)
                                                                                                  tACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg                                                                                                    <  1:1038110/66‑1 (MQ=255)
                                                                                                    cTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACacaaca                              <  2:30539/134‑1 (MQ=255)
                                                                                                          gACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGc                                                                       >  1:1054086/1‑87 (MQ=255)
                                                                                                          gACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGc                                                                       <  2:1054086/87‑1 (MQ=255)
                                                                                                           aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg                                                                                             >  2:1025851/1‑64 (MQ=255)
                                                                                                           aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg                                                                                             <  1:1025851/64‑1 (MQ=255)
                                                                                                           aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTg                                                                                 >  1:570251/1‑76 (MQ=255)
                                                                                                           aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTg                                                                                 <  2:570251/76‑1 (MQ=255)
                                                                                                           aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCgcagca                                            >  2:914810/1‑113 (MQ=255)
                                                                                                           aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCgcagca                                            <  1:914810/113‑1 (MQ=255)
                                                                                                                 gCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCaa                                                                     >  1:826125/1‑82 (MQ=255)
                                                                                                                 gCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCaa                                                                     <  2:826125/82‑1 (MQ=255)
                                                                                                                                ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAg                                         >  1:134064/1‑95 (MQ=255)
                                                                                                                                ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAg                                         <  2:134064/95‑1 (MQ=255)
                                                                                                                                ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCag               >  1:1060346/1‑121 (MQ=255)
                                                                                                                                ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCag               <  2:1060346/121‑1 (MQ=255)
                                                                                                                                ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACgg  >  2:493414/1‑134 (MQ=255)
                                                                                                                                      |                                                                                                                               
AAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGG  >  AM260480/2135724‑2135984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: