| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 561,006 | +G | intergenic (+9/+38) | h16_A0532 → / ← h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 561,005 | 1 | . | G | 100.0% | 87.0 / NA | 23 | intergenic (+8/+39) | h16_A0532/h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (13/10); total (13/10) | |||||||||||
GGCCTTTCCGGCCGCGTTCCCTTGGTTCGGCACGGCGCGCTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACC‑GTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCACCGGGCACTCTGCCTGCGCCAGCACGCGGCCTGCGACTGAACCGATCACC > AM260479/560883‑561128 | ggCCTTTCCGGCCGCGTTCCCTTGGTTCGGCACGGCGCGCTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGcgccg > 1:1029781/1‑134 (MQ=255) gTTCCCTTGGTTCGGCACGGCGCGCTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGttt > 2:443273/1‑134 (MQ=255) cTTGGTTCGGCACGGCGCGCTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGttt < 1:267637/129‑1 (MQ=255) cTTGGTTCGGCACGGCGCGCTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGttt > 2:267637/1‑129 (MQ=255) ttCGGCACGGCGCGCTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAAtt < 2:1029781/134‑1 (MQ=255) gcTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAAtt < 1:107197/121‑1 (MQ=255) gcTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAAtt > 2:558837/1‑121 (MQ=255) gcTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAAtt < 1:558837/121‑1 (MQ=255) gcTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAAtt > 2:107197/1‑121 (MQ=255) cATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGa > 2:263238/1‑134 (MQ=255) tCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGAcc > 1:1057541/1‑131 (MQ=255) tCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGAcc < 2:1057541/131‑1 (MQ=255) cTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCAc < 1:263238/134‑1 (MQ=255) aaCAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAAtt < 2:95616/88‑1 (MQ=255) aaCAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAAtt > 1:95616/1‑88 (MQ=255) aaCAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCACCGGGCAc > 1:323703/1‑134 (MQ=255) cGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGc < 2:301300/72‑1 (MQ=255) cGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGc > 1:301300/1‑72 (MQ=255) cGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCACCGGGCACTCTGCCTGCGCCAGCAcgc < 2:323703/134‑1 (MQ=255) tGAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCACCGGGCACTCTGCCTGCGCCAGCACGCGGCCTGCGACTGAACCGATCAc > 2:284081/1‑134 (MQ=255) gAGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCACCGGGCACTCTGCCTGCGCCAGCACGCGGCCTGCGACTGAACCGATCAcc > 1:777389/1‑134 (MQ=255) aGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCACCGGGCACTCTGCCTGCGCCAGCACGCGGCCTGCGACTGAAc > 2:1029028/1‑125 (MQ=255) aGGTCTACCGGTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCACCGGGCACTCTGCCTGCGCCAGCACGCGGCCTGCGACTGAAc < 1:1029028/125‑1 (MQ=255) | GGCCTTTCCGGCCGCGTTCCCTTGGTTCGGCACGGCGCGCTACTGGCAGGATCGCATCCTCGAACTGCGCGAACAGGTGGCGCTGATGGACGAAGCGCCCCTGTGGGGCGCCTGAGGTCTACC‑GTCGGCGCCGCCAGGGCGCCGGTTTTCCACTAATTTGCTCAACCCTTCTTTTCCGGCGCCTTGACCAGCAGCACCGGGCACTCTGCCTGCGCCAGCACGCGGCCTGCGACTGAACCGATCACC > AM260479/560883‑561128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |