| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 787,879 | 1 | . | T | 100.0% | 105.8 / NA | 28 | intergenic (‑659/+633) | h16_A0728/h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (14/14); total (14/14) | |||||||||||
CGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGC > AM260479/787751‑788003 | cGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:717438/134‑2 (MQ=255) tgCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAAtt > 1:571591/1‑134 (MQ=255) ccGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGc < 2:726558/134‑1 (MQ=255) cTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCtt < 2:571591/134‑1 (MQ=255) cGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCt > 2:477210/1‑89 (MQ=255) cGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCt < 1:477210/89‑1 (MQ=255) cGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATa > 2:154628/1‑134 (MQ=255) tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTgg < 1:752509/102‑1 (MQ=255) tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTgg > 2:752509/1‑102 (MQ=255) ttCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 2:396365/133‑1 (MQ=255) ttCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 1:558325/133‑1 (MQ=255) tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc < 2:642451/127‑1 (MQ=255) tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc > 1:642451/1‑127 (MQ=255) tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCgg > 1:291862/1‑133 (MQ=255) cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCggg < 1:116560/110‑1 (MQ=255) cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCggg > 2:116560/1‑110 (MQ=255) tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg > 1:944067/1‑106 (MQ=255) tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg > 1:933985/1‑106 (MQ=255) tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 2:933985/106‑1 (MQ=255) tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 2:944067/106‑1 (MQ=255) tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg < 2:291862/134‑1 (MQ=255) tAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTgg < 1:618852/58‑1 (MQ=255) tAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTgg > 2:618852/1‑58 (MQ=255) aTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAAt > 2:949943/1‑132 (MQ=255) tttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:989889/131‑1 (MQ=255) tttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg > 1:989889/1‑131 (MQ=255) aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGa > 2:288410/1‑134 (MQ=255) aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGa > 2:874996/1‑134 (MQ=255) cAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATc < 1:288410/134‑1 (MQ=255) aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATaa > 2:165037/1‑50 (MQ=255) aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATaa < 1:165037/50‑1 (MQ=255) aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc < 2:526331/70‑1 (MQ=255) aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc > 1:526331/1‑70 (MQ=255) aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAg > 2:131495/1‑134 (MQ=255) aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAg > 1:877431/1‑134 (MQ=255) aaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGc < 1:949943/134‑1 (MQ=255) | CGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGC > AM260479/787751‑788003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |