Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 1,240,057 +T intergenic (‑57/‑218) h16_A1136 ← / → grpE conserved hypothetical protein/molecular chaperone GrpE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604791,240,0531.T100.0% 119.3 / NA 32intergenic (‑53/‑222)h16_A1136/grpEconserved hypothetical protein/molecular chaperone GrpE
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (17/15);  total (17/15)

ACTGGCAGCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATGCCTGGCCTTTGTAACCGTGTGTTTCCGCGTCACGCCAGCGCCACTCT  >  AM260479/1239984‑1240172
                                                                      |                                                                                                                       
aCTGGCAGCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATa                                                                   <  1:14403/125‑1 (MQ=255)
aCTGGCAGCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATa                                                                   >  2:14403/1‑125 (MQ=255)
     cAGCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCa                                                     >  2:480552/1‑134 (MQ=255)
       gCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGc                                                                                    <  1:436033/101‑1 (MQ=255)
       gCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGc                                                                                    >  2:436033/1‑101 (MQ=255)
       gCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATgc                                                                               >  1:156473/1‑106 (MQ=255)
       gCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATgc                                                                               <  2:156473/106‑1 (MQ=255)
         ttATGCATGGCCAACCTTCCGGAAGACGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACt                                                                                                      >  2:927557/1‑81 (MQ=255)
         ttATGCATGGCCAACCTTCCGGAAGACGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACt                                                                                                      <  1:927557/81‑1 (MQ=255)
            tGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATGcc                                               <  1:480552/133‑1 (MQ=255)
                     aaCCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACt                                                                                                      <  1:515526/69‑1 (MQ=255)
                     aaCCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACt                                                                                                      >  2:515526/1‑69 (MQ=255)
                      aCCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATg                                                 >  2:977069/1‑121 (MQ=255)
                      aCCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATg                                                 <  1:977069/121‑1 (MQ=255)
                          tCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCg                                                              <  2:1053482/104‑1 (MQ=255)
                          tCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCg                                                              >  1:1053482/1‑104 (MQ=255)
                          tCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATGCCTGGCCTTTGTAACCg                                >  2:451489/1‑134 (MQ=255)
                                agagGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATgcagc                                                                            >  1:805278/1‑84 (MQ=255)
                                agagGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATgcagc                                                                            <  2:805278/84‑1 (MQ=255)
                                      acaAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTttat                                                                                                          <  1:769365/48‑1 (MQ=38)
                                      acaAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTttat                                                                                                          >  2:769365/1‑48 (MQ=38)
                                      acaAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATg                                                 <  1:527512/105‑1 (MQ=255)
                                      acaAAGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATg                                                 >  2:527512/1‑105 (MQ=255)
                                        aaaGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGc                                                                                    <  2:126460/68‑1 (MQ=255)
                                        aaaGATGAACCATCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGc                                                                                    >  1:126460/1‑68 (MQ=255)
                                                   aTCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATg                                                 <  1:782106/92‑1 (MQ=255)
                                                   aTCTCCACAACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATg                                                 >  2:782106/1‑92 (MQ=255)
                                                        cacaACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATGcc                                               <  1:534835/89‑1 (MQ=255)
                                                        cacaACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATGcc                                               >  2:534835/1‑89 (MQ=255)
                                                        cacaACCCCCGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATGCCTGGCCTTTGTAACCGTGTGTTTCCGCGTCACGCCAGCGCCActct  >  2:142178/1‑134 (MQ=255)
                                                                 cGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATgc                                                                               <  2:1048239/48‑1 (MQ=38)
                                                                 cGGCATTTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATgc                                                                               >  1:1048239/1‑48 (MQ=38)
                                                                      |                                                                                                                       
ACTGGCAGCTTATGCATGGCCAACCTTCCGGAAGAGGCACAAAGATGAACCATCTCCACAACCCCCGGCATTTTGTCATTTTTATTACTGGGAATCTTAGTGATTGCGATGCAGCAAAGCAATAAGGCGTCGATTGCATATGCCTGGCCTTTGTAACCGTGTGTTTCCGCGTCACGCCAGCGCCACTCT  >  AM260479/1239984‑1240172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: