| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 872790 = | 23 (0.910) | 7 (0.300) | 5/186 | 1.6 | 26.4% | coding (366/423 nt) | ihfB | integration host factor beta subunit |
| ? | AM260479 | 872809 = | 18 (0.780) | coding (385/423 nt) | ihfB | integration host factor beta subunit | |||||
AGCAATAAAAAAAGCGCCCCTAAGGGGGCGCTTTTTTCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/872916‑872790‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgggaTTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAAAGCGCCCCCTTAGGGGCGCTTTTTTTATTGCTGCCGGCCTTGCGTGCGCACCG > AM260479/872809‑872937 AGCAATAAAAAAAGCGCCCCTAAGGGGGCGCTTTTTTCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACG < 1:841509/134‑1 TTTTTTCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCT > 1:285684/1‑133 TTTTTTCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACG > 1:671581/1‑103 TTTTTTCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACG < 2:671581/103‑1 TCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTG < 2:285684/133‑1 CAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACGAGGGTGGGCTGAATTT < 1:335430/98‑1 CAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGATTGCACGAGGGTGGGCTGAATTT > 2:335430/1‑98 CAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTG < 1:417053/63‑1 CAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTG > 2:417053/1‑63 AAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCG < 1:854441/63‑1 AAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCG > 2:854441/1‑63 CGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAAAGCGCCCCCTTAGGGGCGCTTTTTTTATTGCTGCCGGCCTTGCGTGCGCACCG < 2:300422/134‑1 CGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAA < 1:711206/81‑1 CGGGATTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAA > 2:711206/1‑81 AGCAATAAAAAAAGCGCCCCTAAGGGGGCGCTTTTTTCAACCACACAAGCAGCAGGCAAAACCCGGCAATCAGGAAGAGCGGACAAAATTCAGCCCACCCTCGTGCAATCCCGCCGCTGCGGCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/872916‑872790‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgggaTTGCACGAGGGTGGGCTGAATTTTGTCCGCTCTTCCTGATTGCCGGGTTTTGCCTGCTGCTTGTGTGGTTGAAAAAAGCGCCCCCTTAGGGGCGCTTTTTTTATTGCTGCCGGCCTTGCGTGCGCACCG > AM260479/872809‑872937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |