New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 121391512 (0.470)4 (0.180) 4/188 1.6 22.2% coding (257/990 nt) h16_A1115 probable extra‑cytoplasmic solute receptor
?AM260480 409851 = 17 (0.840)coding (47/975 nt) h16_B0363 probable extra‑cytoplasmic solute receptor

AGGCGCTGAAGCGTCCGGTGGTGATCGACAACCGCCCCGGCGCCAACGGCATCGTCGGCGGCGATGCCGT‑‑‑‑‑‑‑‑‑‑  >  AM260479/1213846‑1213915
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgccgtTGGCGCCGGC  >  AM260480/409851‑409860
                                                                                
AGGCGCTGAAGCGTCCGGTGGTGATCGACAACCGCCCCGGCGCCAACGGCATCGTCGGCGGCGATGCCGTTGGCGCC     >  1:228574/1‑77
AGGCGCTGAAGCGTCCGGTGGTGATCGACAACCGCCCCGGCGCCAACGGCATCGTCGGCGGCGATGCCGTTGGCGCC     <  2:228574/77‑1
                                  CCCCGGCGCCAACGGCATCGTCGGCGGCGATGCCGTTGGCGCCGGC  >  1:954915/1‑46
                                  CCCCGGCGCCAACGGCATCGTCGGCGGCGATGCCGTTGGCGCCGGC  <  2:954915/46‑1
                                                                                
AGGCGCTGAAGCGTCCGGTGGTGATCGACAACCGCCCCGGCGCCAACGGCATCGTCGGCGGCGATGCCGT‑‑‑‑‑‑‑‑‑‑  >  AM260479/1213846‑1213915
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgccgtTGGCGCCGGC  >  AM260480/409851‑409860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.