| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AY305378 | = 242209 | 22 (0.910) | 5 (0.230) | 5/186 | 1.5 | 20.8% | intergenic (‑124/+142) | PHG224/PHG225 | hypothetical protein/conserved hypothetical protein |
| ? | AY305378 | = 242219 | 18 (0.810) | intergenic (‑134/+132) | PHG224/PHG225 | hypothetical protein/conserved hypothetical protein | |||||
AAACCTCCTGCAAGCTTGAAGAAGAAGCCCGGAATGACCGGAGACGGGCCTTGGCGGATTGCATGCGAACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCAGCGCCCCCCGCCAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AY305378/242087‑242209‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccagtcTTACCAGATCGACTGGCGGGGGGCGCTGCGTTATCTGGCAGGCGTGAATCGCTGTTTACTTCAGTTCGCATGCAATCCGCCAAGGCCCGTCTCCGGTCATTCCGGGCTTCTTCTTCAAGCTTGCAGGAG < AY305378/242219‑242091 AAACCTCCTGCAAGCTTGAAGAAGAAGCCCGGAATGACCGGAGACGGGCCTTGGCGGATTGCATGCGAACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCATCGCACCCCGCCAG > 1:728957/1‑121AAACCTCCTGCAAGCTTGAAGAAGAAGCCCGGAATGACCGGAGACGGGCCTTGGCGGATTGCATGCGAACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCAGCGCCCCCCGCCAG < 2:728957/121‑1 TGGCGGATTGCATGCGAACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCAGCGCCCCCCGCCAGTCTTACCAGA > 1:862941/1‑80 TGGCGGATTGCATGCGAACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCAGCGCCCCCCGCCAGTCTTACCAGA < 2:862941/80‑1 AACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCAGCGCCCCCCGCCAGTCTTACCAGATCGACTGGCGGGGGGCGCTGCGTTATCTGGCAGGCGTGAATCGCTGTTTACTTCAGTTCGCATGCAATCC > 1:51224/1‑134 AACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCAGCGCCCCCCG < 1:203393/50‑1 AACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCAGCGCCCCCCG > 2:203393/1‑50 TCACGCCTGCCAGATAACGCAGCGCCCCCCGCCAGTCTTACCAGATCGACTGGCGGGGGGCGCTGCGTTATCTGGCAGGCGTGAATCGCTGTTTACTTCAGTTCGCATGCAATCC > 1:85323/1‑115 TCACGCCTGCCAGATAACGCAGCGCCCCCCGCCAGTCTTACCAGATCGACTGGCGGGGGGCGCTGCGTTATCTGGCAGGCGTGAATCGCTGTTTACTTCAGTTCGCATGCAATCC < 2:85323/115‑1 CAGTCTTACCAGATCGACTGGCGGGGGGCGCTGCGTTATCTGGCAGGCGTGAATCGCTGTTTACTTCAGTTCGCATGCAATCCGCCAAGGCCCGTCTCCGGTCATTCCGGGCTTCTTCTTCAAGCTTGCAGGAG > 2:845281/1‑134 TCTTACCAGATCGACTGGCGGGGGGCGCTGCGTTATCTGGCAGGCGTGA < 1:734794/49‑1 TCTTACCAGATCGACTGGCGGGGGGCGCTGCGTTATCTGGCAGGCGTGA > 2:734794/1‑49 AAACCTCCTGCAAGCTTGAAGAAGAAGCCCGGAATGACCGGAGACGGGCCTTGGCGGATTGCATGCGAACTGAAGTAAACAGCGATTCACGCCTGCCAGATAACGCAGCGCCCCCCGCCAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AY305378/242087‑242209‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccagtcTTACCAGATCGACTGGCGGGGGGCGCTGCGTTATCTGGCAGGCGTGAATCGCTGTTTACTTCAGTTCGCATGCAATCCGCCAAGGCCCGTCTCCGGTCATTCCGGGCTTCTTCTTCAAGCTTGCAGGAG < AY305378/242219‑242091 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |