New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1199163	16 (0.730)	4 (0.200)	4/188	1.6	25.2%	coding (862/3411 nt)	dnaE2	DNA polymerase III alpha subunit
	?	AM260480	1199191 =	9 (0.440)					coding (890/3411 nt)	dnaE2	DNA polymerase III alpha subunit

CTGCATCGCGCGCGCCTGGAAGCGGTATCGGCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCATGGCGCTGGCGCCCAATGCCGAGCAGCACCT‑GCGCATGCGCCAGGTGCTGTCGCGCCTGTACCCGCGCGAGGCGCTGGCGCAGACGC  >  AM260480/1199049‑1199286                                                                                                                   |                                                                                                                             cTGCATCGCGCGCGCCTGGAAGCGGTATCGGCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGcc                                                                                                           >  2:830087/1‑134 (MQ=255)    cATCGCGCGCGCCTGGAAGCGGTATCGGCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCg                                                                                                          <  1:830087/132‑1 (MQ=255)    cATCGCGCGCGCCTGGAAGCGGTATCGGCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCt                                                                                                        <  1:27158/134‑1 (MQ=255)                      gCGGTATCGGCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCAtggc                                                                                      <  1:552160/134‑1 (MQ=255)                            tCGGCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGAt                                                                                                                          >  2:870303/1‑92 (MQ=255)                            tCGGCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGAt                                                                                                                          <  1:870303/92‑1 (MQ=255)                              ggCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCAtggcgctggcgc                                                                              >  1:899033/1‑134 (MQ=255)                                              ccGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCATGGCGCTGGCGCCCAATGCCGAgcagca                                                              >  1:817905/1‑134 (MQ=255)                                                  tGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCAtggcgctggcg                                                                               <  1:1016054/113‑1 (MQ=255)                                                  tGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCAtggcgctggcg                                                                               >  2:1016054/1‑113 (MQ=255)                                                                  ggTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGaatgcggcatggcgctggcgcccaatgccgagcagcacctgcgcatgcgccaggtgctgtcgcgcctgtacccgcgcgaggcgc                                          >  2:1062478‑M1/1‑50 (MQ=255)                                                                  ggTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCATGGCGCTGGCGCCCAATGCCGAGCAGCACCT‑GCGCATGCGCCAGGTGc                                         <  2:899033/134‑1 (MQ=255)                                                                       ccATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGaatgcggcatggcgctggcgcccaatgccgagcagcacctgcgcatgcgccaggtgctgtcgcgcctgtacccgcgcgaggcgctggcg                                     <  1:1062478‑M1/134‑90 (MQ=255)                                                                                  cgcTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGc                                                                                                     >  1:635511/1‑59 (MQ=255)                                                                                  cgcTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGc                                                                                                     <  2:635511/59‑1 (MQ=255)                                                                                                         tgtgCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCATGGCGCTGGCGCCCAATGCCGAGCAGCACCT‑GCGCATGCGCCAGGTGCTGTCGCGCCTGTACCCGCGCGAGGCGCTGGCGCAGACGc  <  2:817905/134‑1 (MQ=255)                                                                                                          gtgCTGGCCGaatgcggcatggcgctggcgcccaatgccgagcagcacctgcgcatgcgccaggtgctgtcgcgcctgtacccgcgcgaggcgctggcgcagacgctgaag                         >  2:420998‑M1/1‑10 (MQ=255)                                                                                                          gtgCTGGCCGaatgcggcatggcgctggcgcccaatgccgagcagcacctgcgcatgcgccaggtgctgtcgcgcctgtacccgcgcgaggcgctggcgcagacgctgaag                         <  1:420998‑M1/111‑102 (MQ=255)                                                                                                             cTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCATGGCGCTGGCGCCCAATGCCGAGCAGCACCTGGCGCATGCG‑CAGGTGCTGTCGCGCCTGTACCCGCGCGAGGCGCTGGCGCAGACGc  <  1:457153/130‑1 (MQ=255)                                                                                                             cTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCATGGCGCTGGCGCCCAATGCCGAGCAGCACCTGGCGCATGCG‑CAGGTGCTGTCGCGCCTGTACCCGCGCGAGGCGCTGGCGCAGACGc  >  2:457153/1‑130 (MQ=255)                                                                                                                   gaatgcggcatggcgctggcgcccaatgccgagcagcacctgcgcatgcgccaggtgc                                                                     >  2:203744‑M1/1‑1 (MQ=255)                                                                                                                   gaatgcggcatggcgctggcgcccaatgccgagcagcacctgcgcatgcgccaggtgc                                                                     <  1:203744‑M1/58‑58 (MQ=255)                                                                                                                   |                                                                                                                             CTGCATCGCGCGCGCCTGGAAGCGGTATCGGCACAGACCGGCGTGCCGCTGGCGGCGGCCGGCGCGGTCACCATGCACGTGCGCTCGCGCAAGCCGCTGTCCGATGTGCTGGCCGCGATCCGGCTGGGCCAGCCGCTGGCCGAATGCGGCATGGCGCTGGCGCCCAATGCCGAGCAGCACCT‑GCGCATGCGCCAGGTGCTGTCGCGCCTGTACCCGCGCGAGGCGCTGGCGCAGACGC  >  AM260480/1199049‑1199286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.