New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AY305378	= 94337	NA (NA)	24 (0.990)	23/204	0.2	100%	noncoding (1313/1313 nt)	ISAE1	repeat region
	?	AY305378	= 450602	0 (0.000)					intergenic (‑79/–)	cbbLp/–	ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/–

CAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGT  >  AY305378/94256‑94464                                                                                  |                                                                                                                                cAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACgg                                                                                               <  2:831165/116‑1 (MQ=255) cAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACgg                                                                                               >  1:831165/1‑116 (MQ=255) cAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTg                                                                              >  2:836897/1‑133 (MQ=255) cAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTg                                                                              <  1:836897/133‑1 (MQ=255)  aaaCAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGcc                                                                            >  2:430113/1‑134 (MQ=255)            cTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTc                                                                                     <  1:33886/115‑1 (MQ=255)            cTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTc                                                                                     >  2:33886/1‑115 (MQ=255)             tATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCt                                                                                                                        >  2:821114/1‑79 (MQ=255)             tATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCt                                                                                                                        <  1:821114/79‑1 (MQ=255)                    cGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCcgac                                                          >  1:175238/1‑134 (MQ=255)                              gCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAgcg                                                 <  1:430113/133‑1 (MQ=255)                                     aCCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTgg                                         >  1:117144/1‑134 (MQ=255)                                        tGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGa                                      >  2:984504/1‑134 (MQ=255)                                          aaaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc                                     <  1:984504/133‑1 (MQ=255)                                          aaaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc                                     <  2:117144/133‑1 (MQ=255)                                                    cGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc                                     >  2:640099/1‑123 (MQ=255)                                                    cGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc                                     <  1:640099/123‑1 (MQ=255)                                                     gATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGc                                                                    >  1:866306/1‑91 (MQ=255)                                                     gATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGc                                                                    <  2:866306/91‑1 (MQ=255)                                                     gATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTg                         >  1:501062/1‑134 (MQ=255)                                                                cTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGAcgc                               >  2:561026/1‑117 (MQ=255)                                                                cTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGAcgc                               <  1:561026/117‑1 (MQ=255)                                                                   gAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCAc                                                                         >  1:922775/1‑72 (MQ=255)                                                                   gAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCAc                                                                         <  2:922775/72‑1 (MQ=255)                                                                            aaGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGt  <  1:193260/134‑1 (MQ=255)                                                                                  |                                                                                                                                CAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGT  >  AY305378/94256‑94464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.