Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260479 2320595 2320608 14 2 [0] [1] 2 h16_A2134/h16_A2135 transcriptional regulator, LysR‑family/response regulator, NarL‑family

AACGACCGGAAAGGGACAGAAGCGCCCAAACCCCGGGCCCGCG  >  AM260479/2320552‑2320594
                                          |
aaCGACCGGAAAGGGACAGAAGCGCCCAAACCCCGGGCCcgcg  >  1:900261/1‑43 (MQ=255)
aaCGACCGGAAAGGGACAGAAGCGCCCAAACCCCGGGCCcgcg  <  2:900261/43‑1 (MQ=255)
                                          |
AACGACCGGAAAGGGACAGAAGCGCCCAAACCCCGGGCCCGCG  >  AM260479/2320552‑2320594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: