Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	3032764	3032777	14	2 [0]	[0] 4	h16_A2804	conserved hypothetical protein

CTTTGGCGGGCTGCTCCAGCCCGCCCCACCTGCCCC  >  AM260479/3032728‑3032763                                    | ctTTGGCGGGCTGCTCCAGCCCGCCCCACCTGcccc  <  1:595302/36‑1 (MQ=255) ctTTGGCGGGCTGCTCCAGCCCGCCCCACCTGcccc  >  2:595302/1‑36 (MQ=255)                                    | CTTTGGCGGGCTGCTCCAGCCCGCCCCACCTGCCCC  >  AM260479/3032728‑3032763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑