Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	3671719	3671726	8	2 [1]	[0] 2	h16_A3390/h16_A3391	signal transduction histidine kinase/Hypothetical protein related to helicases

CGTGCGGGTGGCTGGGGGCGGAGATAGCGGGAGGTTACCACTGCGATC  >  AM260479/3671727‑3671774 |                                                cGTGCGGGTGGCTGGGGGCGGAGATAGCGGGAGGTTACCACTGCGATc  <  1:172171/48‑1 (MQ=255) cGTGCGGGTGGCTGGGGGCGGAGATAGCGGGAGGTTACCACTGCGATc  >  2:172171/1‑48 (MQ=255) |                                                CGTGCGGGTGGCTGGGGGCGGAGATAGCGGGAGGTTACCACTGCGATC  >  AM260479/3671727‑3671774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑