Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 2,608,803 T→C W365R (TGG→CGG)  rho → transcription termination factor Rho

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604792,608,8030TC100.0% 54.4 / NA 15W365R (TGG→CGG) rhotranscription termination factor Rho
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (5/10);  total (5/10)

GTGCACCTGGAACGCCGCCTGGCCGAGAAGCGCGTCTACCCGTCGATCAACCTGAACAAGTCGGGCACGCGCCGCGAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCTGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTCATCATGGACAAGATGAAGGCCACGAAGAACAACGCCGAGTTTTTCGATATGATGCGCA  >  AM260479/2608689‑2608914
                                                                                                                  |                                                                                                               
gTGCACCTGGAACGCCGCCTGGCCGAGAAGCGCGTCTACCCGTCGATCAACCTGAACAAGTCGGGCACGCGCCGCGAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCAt                                                                                              <  1:570528/134‑1 (MQ=255)
                      ccGAGAAGCGCGTCTACCCGTCGATCAACCTGAACAAGTCGGGCACGCGCCGCGAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAg                                                                        <  1:159006/134‑1 (MQ=255)
                                                      aaCAAGTCGGGCACGCGCCGCGAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTCATCATGGACAAGATGAAGGc                                        <  1:1025062/134‑1 (MQ=255)
                                                               ggCACGCGCCGCGAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATtcatca                                                        >  1:720537/1‑109 (MQ=255)
                                                               ggCACGCGCCGCGAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATtcatca                                                        <  2:720537/109‑1 (MQ=255)
                                                               ggCACGCGCCGCGAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTCATCATGGACAAGATGAAGGCCACgaagaa                               >  2:483035/1‑134 (MQ=255)
                                                                          cgAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCAtctc                                                                                           >  1:460257/1‑63 (MQ=255)
                                                                          cgAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCAtctc                                                                                           <  2:460257/63‑1 (MQ=255)
                                                                              gagTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTCATCATGGACAAGATGAAGGCCACGAAGAACAACGCCGAGttttt                <  2:567187/134‑1 (MQ=255)
                                                                                           aGCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTCATCATGGACAAGATGAAGGCCACGAAGAACAACGCCGAGTTTTTCGATATGATgcgc   <  2:136099/134‑1 (MQ=255)
                                                                                            gCCGGAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTCATCATGGACAAGATGAAGGCCACGAAGAACAACGCCGAGTTTTTCGATATGATGCGCa  <  1:483035/134‑1 (MQ=255)
                                                                                                gAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATg                                                                  <  1:375712/66‑1 (MQ=255)
                                                                                                gAAATCCTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATg                                                                  >  2:375712/1‑66 (MQ=255)
                                                                                                     ccTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTcatcat                                                       >  1:586324/1‑72 (MQ=255)
                                                                                                     ccTGCAGAAGATCCGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTcatcat                                                       <  2:586324/72‑1 (MQ=255)
                                                                                                                  |                                                                                                               
GTGCACCTGGAACGCCGCCTGGCCGAGAAGCGCGTCTACCCGTCGATCAACCTGAACAAGTCGGGCACGCGCCGCGAAGAGTTGCTGATCAAGCCGGAAATCCTGCAGAAGATCTGGATCCTGCGCAAGTTCATCTCCGACATGGATGAAGTGCAGGCGATGGAATTCATCATGGACAAGATGAAGGCCACGAAGAACAACGCCGAGTTTTTCGATATGATGCGCA  >  AM260479/2608689‑2608914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: