Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 406,488 G→T L70I (CTC→ATC)  h16_A0388 ← ABC‑type transporter, ATPase component: HAAT family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM260479406,4880GT100.0% 95.1 / NA 26L70I (CTC→ATC) h16_A0388ABC‑type transporter, ATPase component: HAAT family
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (11/15);  total (11/15)

CGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGAGCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTTCAGG  >  AM260479/406361‑406609
                                                                                                                               |                                                                                                                         
cGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGt                                                                                                                      <  2:294392/133‑1 (MQ=255)
         gAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAggt                                                                                                            >  2:930727/1‑134 (MQ=255)
              ttCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCt                                                                                                       >  2:796509/1‑134 (MQ=255)
                                   ccccATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAag                                                                                                                 >  1:211451/1‑103 (MQ=255)
                                   ccccATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAag                                                                                                                 <  2:211451/103‑1 (MQ=255)
                                                  cTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCt                                                                   >  2:301492/1‑134 (MQ=255)
                                                                 gCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGt                                                    >  1:996511/1‑134 (MQ=255)
                                                                        aTGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagc                                               <  1:695631/132‑1 (MQ=255)
                                                                        aTGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagc                                               <  1:796509/132‑1 (MQ=255)
                                                                           tgGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCgaga                                           <  2:996511/133‑1 (MQ=255)
                                                                                gCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagcga                                             >  1:517580/1‑126 (MQ=255)
                                                                                gCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagcga                                             <  2:517580/126‑1 (MQ=255)
                                                                                 ccGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAaggagg                                                                                                             <  1:510560/61‑1 (MQ=255)
                                                                                 ccGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAaggagg                                                                                                             >  2:510560/1‑61 (MQ=255)
                                                                                         cACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCg                            <  1:301492/134‑1 (MQ=255)
                                                                                                       cGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCAt                <  1:59098/132‑1 (MQ=255)
                                                                                                           cAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGtt          <  1:930727/134‑1 (MQ=255)
                                                                                                            aGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGaccac                                                                     >  1:768096/1‑74 (MQ=255)
                                                                                                            aGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGaccac                                                                     <  2:768096/74‑1 (MQ=255)
                                                                                                            aGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTcg                                                                 <  2:285958/78‑1 (MQ=255)
                                                                                                            aGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTcg                                                                 >  1:285958/1‑78 (MQ=255)
                                                                                                                 caccaGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagcga                                             >  2:110988/1‑93 (MQ=255)
                                                                                                                 caccaGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagcga                                             <  1:110988/93‑1 (MQ=255)
                                                                                                                  accaGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGc                                                                            >  1:125934/1‑61 (MQ=255)
                                                                                                                  accaGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGc                                                                            <  2:125934/61‑1 (MQ=255)
                                                                                                                   ccaGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTTCAgg  <  2:1049058/134‑1 (MQ=255)
                                                                                                                               |                                                                                                                         
CGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGAGCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTTCAGG  >  AM260479/406361‑406609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: