Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 1,231,226 2 bp→CA intergenic (+63/‑151) glnE → / → h16_A1128 glutamine synthetase adenylyltransferase/Membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604791,231,2260AC100.0% 27.7 / NA 9intergenic (+63/‑152)glnE/h16_A1128glutamine synthetase adenylyltransferase/Membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (5/4);  total (5/4)
*AM2604791,231,2270CA100.0% 27.5 / NA 9intergenic (+64/‑151)glnE/h16_A1128glutamine synthetase adenylyltransferase/Membrane protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (5/4);  total (5/4)

TGGTGCTGCTGCACAACCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCACCGCTGGCACTGGCGGTGGGCGATGCCTACCGGCTGTTCCGCGCGCGCCAGCACCAGCTGCGGCTC  >  AM260479/1231127‑1231292
                                                                                                   ||                                                                 
tGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGAt                                            <  1:1017945/122‑1 (MQ=255)
tGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGAt                                            >  2:1017945/1‑122 (MQ=255)
           gcacagccGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGATGCCTACCGGCTGTTCcgcgcgc                      >  2:65653/7‑134 (MQ=255)
              cagccGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGATGCCTACCGGCTGTTCCGCGCGCGcc                   <  1:65653/131‑1 (MQ=255)
                               aGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGATGCCTACCGGCTGTTCCGCGCGCGCCAGCACCAGCTGCGGCTc  >  2:953852/1‑134 (MQ=255)
                                                                ctgcGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGATGCCTACCGGCTGTTCCGCGCGCGCCAGCACCAGCTGCGGCt   >  1:925174/1‑101 (MQ=255)
                                                                ctgcGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGTGGGCGATGCCTACCGGCTGTTCCGCGCGCGCCAGCACCAGCTGCGGCt   <  2:925174/101‑1 (MQ=255)
                                                                              cGAGCTGGGCCTGATCGACGCCACGCTGGCACTgg                                                       <  1:498927/35‑1 (MQ=25)
                                                                              cGAGCTGGGCCTGATCGACGCCACGCTGGCACTgg                                                       >  2:498927/1‑35 (MQ=21)
                                                                                                   ||                                                                 
TGGTGCTGCTGCACAACCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCACCGCTGGCACTGGCGGTGGGCGATGCCTACCGGCTGTTCCGCGCGCGCCAGCACCAGCTGCGGCTC  >  AM260479/1231127‑1231292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: