| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 159,885 | Δ1 bp | coding (149/939 nt) | h16_A0146 → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 159,883 | 0 | G | . | 100.0% | 33.8 / NA | 9 | coding (147/939 nt) | h16_A0146 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (5/4); total (5/4) | |||||||||||
GTGGATGTCAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCCGGGAACCCGCGCCGCAGGAAGCCCCCGCTCCCC > AM260479/159758‑159915 | gTGGATGTCAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAAccc < 1:865956/132‑1 (MQ=255)gTGGATGTCAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAAccc > 2:865956/1‑132 (MQ=255) cAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGcgccg > 1:517609/1‑130 (MQ=255) cAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGcgccg < 2:517609/130‑1 (MQ=255) gCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCAGGAAGcccccgctcccc > 1:241773/1‑134 (MQ=255) cgGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCa > 1:481236/1‑65 (MQ=255) cgGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCa < 2:481236/65‑1 (MQ=255) ccgcAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCcgc < 1:177877/38‑1 (MQ=37) ccgcAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCcgc > 2:177877/1‑38 (MQ=37) | GTGGATGTCAGCAACACGCCCACGCTGGAAGCGGTGCTGCTGCCGCCGCCCAGGCCGCCAGCCCCACCCGCGCCGCGGCCGGTGCCGCGCCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCCGGGAACCCGCGCCGCAGGAAGCCCCCGCTCCCC > AM260479/159758‑159915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |