Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260480 963,917 Δ1 bp intergenic (+84/‑3) h16_B0849 → / → h16_B0850 Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM260480963,9140A.100.0% 115.0 / NA 26intergenic (+81/‑6)h16_B0849/h16_B0850Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (13/13);  total (13/13)

CTCCAGCGAGATCCAGCACGAACTGCTGGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCGTTTGCCGAAATGGGCTGGCTGGCCGTG  >  AM260480/963782‑964039
                                                                                                                                    |                                                                                                                             
cTCCAGCGAGATCCAGCACGAACTGCTGGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGa                                                                                                                               >  1:985252/1‑133 (MQ=255)
cTCCAGCGAGATCCAGCACGAACTGCTGGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGa                                                                                                                               >  2:49697/1‑133 (MQ=255)
cTCCAGCGAGATCCAGCACGAACTGCTGGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGa                                                                                                                               >  2:1033771/1‑133 (MQ=255)
   cAGCGAGATCCAGCACGAACTGCTGGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGaaag                                                                                                                            <  1:700262/133‑2 (MQ=255)
   cAGCGAGATCCAGCACGAACTGCTGGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGaaag                                                                                                                            <  1:559916/133‑2 (MQ=255)
   cAGCGAGATCCAGCACGAACTGCTGGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGaaag                                                                                                                            <  1:49697/133‑2 (MQ=255)
                         ctgGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAAcgcg                                                                                                    <  1:972804/134‑1 (MQ=255)
                         ctgGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAAcgcg                                                                                                    <  1:1074789/134‑1 (MQ=255)
                         ctgGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAAcgcg                                                                                                    <  2:1089928/134‑1 (MQ=255)
                            gCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGc                                                                                                  >  2:424123/1‑133 (MQ=255)
                             ccAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAAcgcg                                                                                                    <  1:344544/130‑1 (MQ=255)
                             ccAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAAcgcg                                                                                                    >  2:344544/1‑130 (MQ=255)
                                      tGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGa                                                                                       <  2:985252/134‑1 (MQ=255)
                                          gggCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGaaag                                                                                                                            <  1:982037/94‑2 (MQ=255)
                                          gggCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGaaag                                                                                                                            >  2:982037/1‑93 (MQ=255)
                                                    tGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTAc                                                                                               >  1:907699/1‑112 (MQ=255)
                                                    tGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTAc                                                                                               <  2:907699/112‑1 (MQ=255)
                                                          cAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCt                                                                     <  1:424123/132‑1 (MQ=255)
                                                               gTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAg                                                              >  1:607368/1‑134 (MQ=255)
                                                                      cAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATg                                                       >  2:35088/1‑134 (MQ=255)
                                                                        aCCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGc                                                     >  1:690444/1‑134 (MQ=255)
                                                                                 aaGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCgcgc                                            <  1:1033771/134‑1 (MQ=255)
                                                                                              caTGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAgg                               >  1:177429/1‑134 (MQ=255)
                                                                                                tGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCg                             >  1:122916/1‑134 (MQ=255)
                                                                                                   gCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGc                                                     <  1:1006429/107‑1 (MQ=255)
                                                                                                   gCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGc                                                     >  2:1006429/1‑107 (MQ=255)
                                                                                                          aaCGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCGTTTGCCGaaa                   <  2:690444/134‑1 (MQ=255)
                                                                                                           aCGGACGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCGTTTGCCGAAAt                  >  1:1011831/1‑134 (MQ=255)
                                                                                                               aCGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCGTTTGCCGAAATGggc              <  2:607368/134‑1 (MQ=255)
                                                                                                                cGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGa                                                         <  2:69095/90‑1 (MQ=255)
                                                                                                                cGATCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGa                                                         >  1:69095/1‑90 (MQ=255)
                                                                                                                   tCGCCGCATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCGTTTGCCGAAATGggctggc          >  1:17546/1‑134 (MQ=255)
                                                                                                                   gcgccgcATGCTGCAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCGTTTGCCGAAATGggctggc          >  1:211293/2‑134 (MQ=255)
                                                                                                                           tgctgcAGGAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCGTTTGCCGAAATGGGCTGGCTGGCCGTg  <  1:850427/134‑1 (MQ=255)
                                                                                                                                    |                                                                                                                             
CTCCAGCGAGATCCAGCACGAACTGCTGGCCAAGCAGGTGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCGCCGCATGCTGCAGGAAAAGCGTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAAGCACTGGCAGGCGTTTGCCGAAATGGGCTGGCTGGCCGTG  >  AM260480/963782‑964039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: