Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 1,231,117 Δ1 bp coding (2606/2652 nt) glnE → glutamine synthetase adenylyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604791,231,1150G.100.0% 119.2 / NA 27coding (2604/2652 nt)glnEglutamine synthetase adenylyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (13/14);  total (13/14)

CGCGATGCCGCCGCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGGTGCAGTACCTGGTGCTGCTGCACAACCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCACCGCTGGCACTGGCGGT  >  AM260479/1230987‑1231243
                                                                                                                                |                                                                                                                                
cgcgATGCCGCCGCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACggtg                                                                                                                               >  1:862692/1‑130 (MQ=255)
 gcgATGCCGCCGCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAg                                                                                                                           <  2:359804/134‑1 (MQ=255)
       ccgccgCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTg                                                                                                                     <  2:7066/134‑1 (MQ=255)
         gccgcGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGt                                                                                                                   <  2:676340/134‑1 (MQ=255)
          gcccgcTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGtg                                                                                                                  >  1:693369/4‑134 (MQ=255)
          ccgcGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGtg                                                                                                                  >  2:12056/1‑134 (MQ=255)
                                   gATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACgg                                                                                                                                 <  2:388896/95‑1 (MQ=255)
                                   gATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACgg                                                                                                                                 >  1:388896/1‑95 (MQ=255)
                                            cAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGAcgc                                                                               >  1:569844/1‑134 (MQ=255)
                                            cAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGAcgc                                                                               >  1:959722/1‑134 (MQ=255)
                                                                   aCCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCgctg                                                       >  2:1053682/1‑134 (MQ=255)
                                                                        accgaccTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTgcg                                                  >  1:1021971/1‑134 (MQ=255)
                                                                            accTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTgcgcg                                                >  1:1087452/1‑132 (MQ=255)
                                                                            accTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTgcgcg                                                >  1:430094/1‑132 (MQ=255)
                                                                            accTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTgcgcg                                                >  1:136263/1‑132 (MQ=255)
                                                                             ccTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAg                                             <  1:1098088/134‑1 (MQ=255)
                                                                             ccTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAg                                             <  2:380094/134‑1 (MQ=255)
                                                                                     aCCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGtgctgc                                                                                                              >  1:592291/1‑63 (MQ=255)
                                                                                     aCCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGtgctgc                                                                                                              <  2:592291/63‑1 (MQ=255)
                                                                                       cTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCt                                   <  2:1021971/134‑1 (MQ=255)
                                                                                          aaGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTAc                                                                                                                        >  2:968243/1‑48 (MQ=39)
                                                                                          aaGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTAc                                                                                                                        <  1:968243/48‑1 (MQ=39)
                                                                                             cACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGcac                                                                                                         >  2:495297/1‑60 (MQ=255)
                                                                                             cACGATCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGcac                                                                                                         <  1:495297/60‑1 (MQ=255)
                                                                                                  tCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCg                        <  2:569844/134‑1 (MQ=255)
                                                                                                  tCGCGGCGGCATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCg                        <  2:959722/134‑1 (MQ=255)
                                                                                                      ggcggcATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGc                    <  2:136263/134‑1 (MQ=255)
                                                                                                        cggcATGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGcca                  <  2:430094/134‑3 (MQ=255)
                                                                                                            aTGGTCGATATCGAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGccacgct              <  1:125260/134‑7 (MQ=255)
                                                                                                                        gAATTCACGGTGCAGTACCTGGTGCTGCTGCACAGCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCCACGCTGGCACTGGCGGt  >  2:709/1‑134 (MQ=255)
                                                                                                                                |                                                                                                                                
CGCGATGCCGCCGCGCTGCGCGACGAGATCATGCAGATGCGCCGCAAGGTCGCCGAAGGCCATCCCAACCCGACCGACCTGTTCGACCTGAAGCACGATCGCGGCGGCATGGTCGATATCGAATTCACGGGTGCAGTACCTGGTGCTGCTGCACAACCCGGGCGCACCCGCAGCTGACGCGCAACGCGGGGCAATATCGCGCTGCTGCGCGCAGCGGGCGAGCTGGGCCTGATCGACGCACCGCTGGCACTGGCGGT  >  AM260479/1230987‑1231243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: