Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 2,594,128 Δ1 bp coding (326/957 nt) cR ← Recombinational DNA repair protein (RecF pathway)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604792,594,1280C.100.0% 72.3 / NA 17coding (326/957 nt)cRRecombinational DNA repair protein (RecF pathway)
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (7/10);  total (7/10)

ATGCGCTGGGCGGACTTGGGCCCGACGCCGGGCAGCACCCGCAGCGCTTCGACCAGTGCTTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGCGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTGCGCACGGCGTCATTGAAGGCGGCG  >  AM260479/2594023‑2594229
                                                                                                         |                                                                                                     
aTGCGCTGGGCGGACTTGGGCCCGACGCCGGGCAGCACCCGCAGCGCTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAgg                                                                          <  2:238069/134‑1 (MQ=255)
     cTGGGCGGACTTGGGCCCGACGCCGGGCAGCACCCGCAGCGCTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGccc                                                                       >  1:576123/1‑132 (MQ=255)
     cTGGGCGGACTTGGGCCCGACGCCGGGCAGCACCCGCAGCGCTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGccc                                                                       >  1:636734/1‑132 (MQ=255)
              cTTGGGCCCGACGCCGGGCAGCACCCGCAGCGCTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGa                                                            <  2:680913/134‑1 (MQ=255)
                      cGACGCCGGGCAGCACCCGCAGCGCTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCa                                                                            >  1:470552/1‑110 (MQ=255)
                      cGACGCCGGGCAGCACCCGCAGCGCTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCa                                                                            <  2:470552/110‑1 (MQ=255)
                               gcagcaCCCGCAGCGCTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCg                                           <  2:636734/134‑1 (MQ=255)
                               gcagcaCCCGCAGCGCTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCg                                           <  2:515786/134‑1 (MQ=255)
                                            cgcTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAg                                                                                 >  1:591486/1‑83 (MQ=255)
                                            cgcTTCGACCAGTGCCTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAg                                                                                 <  2:591486/83‑1 (MQ=255)
                                                            tGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTg                          >  1:259663/1‑122 (MQ=255)
                                                            tGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTg                          <  2:259663/122‑1 (MQ=255)
                                                                        ggggACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTGCGCACGGCGTCAtt            <  2:248596/124‑1 (MQ=255)
                                                                        ggggACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTGCGCACGGCGTCAtt            >  1:248596/1‑124 (MQ=255)
                                                                        ggggACGATGCCTTCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTGCGCACGGCGTCATTGAAggcggcg  <  2:576123/134‑1 (MQ=255)
                                                                                    ttCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTg                          <  2:460918/98‑1 (MQ=255)
                                                                                    ttCACAGTGGCGTTCAGAACGGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTg                          >  1:460918/1‑98 (MQ=255)
                                                                                                         |                                                                                                     
ATGCGCTGGGCGGACTTGGGCCCGACGCCGGGCAGCACCCGCAGCGCTTCGACCAGTGCTTGCAGCGAGGTCGGGGACGATGCCTTCACAGTGGCGTTCAGAACGCGCAGCTTGAAGCCCGGGGGCAGCGGCAGGCCCGAGGTCATCGAGCCCATCTTTTCCTGCGAGGTGGCTTCGGCCTTGCGCACGGCGTCATTGAAGGCGGCG  >  AM260479/2594023‑2594229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: