Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 2,907,333 Δ1 bp coding (209/1221 nt) h16_A2693 → conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604792,907,3320A.100.0% 43.0 / NA 11coding (208/1221 nt)h16_A2693conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (7/4);  total (7/4)

CTGCCGCCGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGGACAAGAAACAGCAATTATGCCGGGCGAACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAGGCCCAGGCGCCCGCACCGCCGCCCCG  >  AM260479/2907210‑2907456
                                                                                                                          |                                                                                                                            
atGCCGCCGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTAc                                                                                                                >  1:1007987/2‑134 (MQ=255)
         gCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAg                                                                                                       >  2:416813/1‑134 (MQ=255)
                        aaCCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGc                                                                                        <  1:102279/134‑1 (MQ=255)
                                    tCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTg                                                                            >  1:118743/1‑134 (MQ=255)
                                                                         cGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGcc                                        <  1:126188/133‑1 (MQ=255)
                                                                         cGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGcc                                        <  2:1007987/133‑1 (MQ=255)
                                                                                agctTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCa                                  <  2:118743/132‑1 (MQ=255)
                                                                                         gAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAGGcc                         >  2:632559/1‑132 (MQ=255)
                                                                                                 tcaagaaCAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAGGCCCAGGCGccc                >  2:1007019/6‑134 (MQ=255)
                                                                                                               tATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAGGCCCAGGCGCCCGCACCGCCGCCCCg  >  1:32224/1‑134 (MQ=255)
                                                                                                               tATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAGGCCCAGGCGCCCGCACCGCCGCCCCg  >  2:147276/1‑134 (MQ=255)
                                                                                                                          |                                                                                                                            
CTGCCGCCGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGGACAAGAAACAGCAATTATGCCGGGCGAACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAGGCCCAGGCGCCCGCACCGCCGCCCCG  >  AM260479/2907210‑2907456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: