Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 3,247,999 Δ1 bp coding (763/813 nt) h16_A3001 → transcriptional regulator, LysR‑family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604793,247,9970C.100.0% 43.9 / NA 11coding (761/813 nt)h16_A3001transcriptional regulator, LysR‑family
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (5/6);  total (5/6)

GGCCTTCGCGCTGCGCCACCTGGAGCCGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGATTCGTCGCCGGCGTCGCCTATGATGCCCGAGCCGCGACCCGCAACCTTGCCCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACCGTGACGCACCTGGCCGTCAGCAGGGTGCCTACCTGCG  >  AM260479/3247863‑3248082
                                                                                                                                      |                                                                                      
ggCCTTCGCGCTGCGCCACCTGGAGCCGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGAcc                                                                                       >  1:821716/1‑134 (MQ=255)
         gcTGCGCCACCTGGAGCCGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCtgc                                                                             >  1:306444/1‑132 (MQ=255)
                       aGCCGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTcggcc                                                              <  2:821716/134‑1 (MQ=255)
                         ccGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTcggccgg                                                            <  2:522482/134‑1 (MQ=255)
                                       ggAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTgg                                                >  2:491694/1‑132 (MQ=255)
                                                     cgGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCAc                               <  1:491694/134‑1 (MQ=255)
                                                                           ggAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGcc          >  1:631815/1‑133 (MQ=255)
                                                                            gagaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTg                                                 >  1:597201/1‑94 (MQ=255)
                                                                            gagaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTg                                                 >  1:977520/1‑94 (MQ=255)
                                                                            gagaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTg                                                 <  2:597201/94‑1 (MQ=255)
                                                                            gagaTCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTg                                                 <  2:977520/94‑1 (MQ=255)
                                                                                  gggCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTgcg  <  2:631815/134‑1 (MQ=255)
                                                                                                                                      |                                                                                      
GGCCTTCGCGCTGCGCCACCTGGAGCCGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGATTCGTCGCCGGCGTCGCCTATGATGCCCGAGCCGCGACCCGCAACCTTGCCCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACCGTGACGCACCTGGCCGTCAGCAGGGTGCCTACCTGCG  >  AM260479/3247863‑3248082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: