| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260480 | 69,908 | +G | intergenic (+89/‑184) | h16_B0060 → / → h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260480 | 69,908 | 1 | . | G | 100.0% | 99.5 / NA | 27 | intergenic (+89/‑184) | h16_B0060/h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (16/11); total (16/11) | |||||||||||
AGCTTTGCGGGGTTGGACCCGGCTGTGCCGGCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTA‑CGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCGGTAACTTGCGTAACGGCGCGC > AM260480/69778‑70026 | aGCTTTGCGGGGTTGGACCCGGCTGTGCCGGCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTagcg < 2:174464/134‑4 (MQ=255) gtgCCGGCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGc > 2:135245/1‑134 (MQ=255) gtgCCGGCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGc > 1:97825/1‑134 (MQ=255) ggCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTcg > 1:895510/1‑134 (MQ=255) gCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCg > 1:1033215/1‑121 (MQ=255) gCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCg < 2:1033215/121‑1 (MQ=255) cTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTcgcg < 1:764799/134‑1 (MQ=255) gTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATg > 2:575895/1‑134 (MQ=255) gCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGc < 1:575895/134‑1 (MQ=255) cGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGcccc > 1:1001394/1‑90 (MQ=255) cGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGcccc < 2:1001394/90‑1 (MQ=255) cGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCt < 2:432902/134‑1 (MQ=255) tcgCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAacac > 1:969341/1‑134 (MQ=255) ttGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATc > 2:737914/1‑134 (MQ=255) aCGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCt > 1:100583/1‑70 (MQ=255) aCGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCt < 2:100583/70‑1 (MQ=255) gTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGccc > 1:278066/1‑134 (MQ=255) gcgcgcCCTTGCGGCGCGGCCTGACGCGCATCCGTTAGCGCGcccc > 1:805611/1‑46 (MQ=25) gcgcgcCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGcccc < 2:805611/46‑1 (MQ=38) gcgcCCTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCgg < 1:737914/134‑1 (MQ=255) cTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGcccc > 1:986863/1‑39 (MQ=37) cTTGCGGCGCGCCCTGACGCGCATCCTTTAGCGCGcccc < 2:986863/39‑1 (MQ=37) cTGACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCGGTAACTTGCGTAACGgcgc > 2:394590/1‑134 (MQ=255) gACGCGCATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCGGTAACTTGCGTAACGgcgcgc > 2:287015/1‑134 (MQ=255) gcgcATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCa < 1:782129/106‑1 (MQ=255) gcgcATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCa > 2:343881/1‑106 (MQ=255) gcgcATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCa < 1:343881/106‑1 (MQ=255) gcgcATCCTTTAGCGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCa > 2:782129/1‑106 (MQ=255) | AGCTTTGCGGGGTTGGACCCGGCTGTGCCGGCTTTCCCCTGAGCCGTCGGCGTATCGTCGCTTATTGTCGTTCAACGCGGTCGCATGTCTTTCCGCGCGCCCTTGCGGCGCGCCCTGACGCGCATCCTTTA‑CGCGCCCCGGCTCGCACCGGAACCGCCTTCGCGGTTCCGGTGTGATGCCGCTGCAACACTCCGATCTTTCCCGGTTTGCCCCCATGAGACGCATGCGGTAACTTGCGTAACGGCGCGC > AM260480/69778‑70026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |