| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 3,301,576 | +G | intergenic (+45/‑146) | lspA → / → dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 3,301,574 | 1 | . | G | 100.0% | 27.5 / NA | 9 | intergenic (+43/‑148) | lspA/dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (3/6); total (3/6) | |||||||||||
GGCCTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCA‑GGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCGCCCTC > AM260479/3301447‑3301624 | ggccTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCA‑gggtga < 1:27721/134‑5 (MQ=255)ggccTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCA‑gggt > 1:123768/1‑130 (MQ=255)ggccTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCA‑gggt < 2:123768/132‑3 (MQ=255)ggccTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCA‑gggt > 2:886356/1‑130 (MQ=255) cTTCAACGTGGCCGACTGCGCGATCACGGTCGGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCA‑gggt < 2:2580/134‑3 (MQ=255) cTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAggg < 1:10156/134‑1 (MQ=255) cgcgATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGca < 1:886356/132‑1 (MQ=255) gcgcGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAAcc < 2:149685/134‑1 (MQ=255) gcAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGccac < 1:183172/97‑1 (MQ=255) gcAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGccac > 2:183172/1‑97 (MQ=255) cTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAATGca > 1:68810/1‑42 (MQ=255) cTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAATGca < 2:68810/42‑1 (MQ=255) cACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCGCCCTc > 1:92858/1‑66 (MQ=255) cACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCGCCCTc < 2:92858/66‑1 (MQ=255) | GGCCTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCA‑GGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCGCCCTC > AM260479/3301447‑3301624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |