Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 3,301,576 +G intergenic (+45/‑146) lspA → / → dfp lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604793,301,5741.G100.0% 27.5 / NA 9intergenic (+43/‑148)lspA/dfplipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (3/6);  total (3/6)

GGCCTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCGCCCTC  >  AM260479/3301447‑3301624
                                                                                                                                     |                                                  
ggccTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggtga                                              <  1:27721/134‑5 (MQ=255)
ggccTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggt                                                >  1:123768/1‑130 (MQ=255)
ggccTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggt                                                <  2:123768/132‑3 (MQ=255)
ggccTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggt                                                >  2:886356/1‑130 (MQ=255)
   cTTCAACGTGGCCGACTGCGCGATCACGGTCGGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggt                                                <  2:2580/134‑3 (MQ=255)
   cTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAggg                                            <  1:10156/134‑1 (MQ=255)
                     cgcgATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGca                            <  1:886356/132‑1 (MQ=255)
                                        gcgcGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAAcc            <  2:149685/134‑1 (MQ=255)
                                                                      gcAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGccac                   <  1:183172/97‑1 (MQ=255)
                                                                      gcAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGccac                   >  2:183172/1‑97 (MQ=255)
                                                                                                                    cTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAATGca                            >  1:68810/1‑42 (MQ=255)
                                                                                                                    cTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAATGca                            <  2:68810/42‑1 (MQ=255)
                                                                                                                      cACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCGCCCTc  >  1:92858/1‑66 (MQ=255)
                                                                                                                      cACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCGCCCTc  <  2:92858/66‑1 (MQ=255)
                                                                                                                                     |                                                  
GGCCTTCAACGTGGCCGACTGCGCGATCAC‑‑‑‑‑GGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCGCCCTC  >  AM260479/3301447‑3301624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: