New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1755368	9 (0.320)	3 (0.110)	3/196	2.4	25.7%	coding (1181/2235 nt)	pulA	Type II secretory pathway, pullulanase PulA
	?	AM260480	= 1755387	9 (0.340)					coding (1200/2235 nt)	pulA	Type II secretory pathway, pullulanase PulA

CGCTTCGACCTGGGCACCACCCTCGGGCGCGAGGGCAACGGCTTCGATGCGGGCTCGGGCTTTTTCGATGCACTGATGCAGGATCCGGTGCTGAGCCGCGTCAAGCTGATCTCCGAGCCGTGGGACCTGGGCCCGGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1755229‑1755368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcggGTGGTTGCCAAGCTGGTAGCCGCCCGGGCCCAGGTCCCACGGCTCGGAGATCAGCTTGACGCGGCTCAGCACCGGATCCTGCATCAGTGCATCGAAAAAGCCCGAGCCCGCATCGAAGCCGTTGCCCTCGCGC  <  AM260480/1755387‑1755255                                                                                                                                                                                                                                                                                   CGCTTCGACCTGGGCACCACCCTCGGGCGCGAGGGCAACGGCTTCGATGCGGGCTCGGGCTTTTTCGATGCACTGATGCAGGATCCGGTGCTGAGCCGCGTCAAGCTGATCTCCGAGCCGTGGGACCTGGGCC                                                                                                                                              <  2:696172/133‑1       GACCTGGGCACCACCCTCGGGCGCGAGGGCAACGGCTTCGATGCGGGCTCGGGCTTTTTCGATGCACTGATGCAGGATCCGGTGCTGAGCCGCGTCAAGCTGATCTCCGAGCCGTGGGACCTGGGCCCGGGCGG                                                                                                                                       <  2:766500/134‑1       GACCTGGGCACCACCCTCGGGCGCGAGGGCAACGGCTTCGATGCGGGCTCGGGCTTTTTCGATGCACTGATGCAGGATCCGGTGCTGAGCCGCGTCAAGCTGATCTCCGAGCCGTGGGACCTGGGCCCGGGCGG                                                                                                                                       <  2:840801/134‑1                ACCACCCTCGGGCGCGAGGGCAACGGCTTCGATGCGGGCTCGGGCTTTTTCGATGCACTGATGCAGGATCCGGTGCTGAGCCGCGTCAAGCTGATCTCCGAGCCGTGGGACCTGGGCCCGGGCGGGTGGTTGCC                                                                                                                              <  1:684464/134‑1                                                                         CTGATGCAGGATCCGGTGCTGAGCCGCGTCAAGCTGATCTCCGAGCCGTGGGACCTGGGCCCGGGCGGTTGGTTGCCAAGCTGGTAGCCGCCC                                                                                                              <  1:51298/93‑1                                                                         CTGATGCAGGATCCGGTGCTGAGCCGCGTCAAGCTGATCTCCGAGCCGTGGGACCTGGGCCCGGGCGGGTGGTTGCCAAGCTGGTAGCCGCCC                                                                                                              >  2:51298/1‑93                                                                                                                                     CCGGGCGGGTGGTTGCCAAGCTGGTAGCCGCCCGGGCCCAGGTCCCACGGCTCGGAGATCAGCTTGACGCGGCTCAGCACCGGATCCTGCATCAGTGCATCGAAAAAGCCCGAGCCCGCATCGAAGCCGTTGCC         <  2:137303/134‑1                                                                                                                                            GGTGGTTGCCAAGCTGGTAGCCGCCCGGGCCCAGGTCCCACGGCTCGGAGATCAGCTTGACGCGGCTCAGCACCGGATCCTGCATCAGTGCATCGAAAAAGCCCGAGCCCGCATCGAAGCCGTTGCCCTCGCGC  <  1:787596/134‑1                                                                                                                                                                                                                                                                                   CGCTTCGACCTGGGCACCACCCTCGGGCGCGAGGGCAACGGCTTCGATGCGGGCTCGGGCTTTTTCGATGCACTGATGCAGGATCCGGTGCTGAGCCGCGTCAAGCTGATCTCCGAGCCGTGGGACCTGGGCCCGGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1755229‑1755368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcggGTGGTTGCCAAGCTGGTAGCCGCCCGGGCCCAGGTCCCACGGCTCGGAGATCAGCTTGACGCGGCTCAGCACCGGATCCTGCATCAGTGCATCGAAAAAGCCCGAGCCCGCATCGAAGCCGTTGCCCTCGCGC  <  AM260480/1755387‑1755255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.