New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	370871 =	8 (0.290)	3 (0.120)	3/196	2.3	26.8%	coding (41/621 nt)	sco2	cytochrome oxidase assembly protein, Sco1/SenC family
	?	AM260479	370971 =	9 (0.360)					coding (141/621 nt)	sco2	cytochrome oxidase assembly protein, Sco1/SenC family

GCAGCGTGGCGGCACGATCGGCGATACTGCGTGATGTCGCCGCCCTCCGGTGCCGCTGTTTCCTCCCACCCCTGACCGGTTTCCGCCGCATGCCCCGCCTAAGCCCCGCCTCCGGCCTGTTCGCCGCCTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGCTGCCTGCGGGCAGCAGAAGGCCTCGTTCCGCAATGTCGACATCACCGGCGCGGCGGACTTCGGCAAGGACTTCTCGCTGACCGACCAT  >  AM260479/370742‑371001                                                                                                                                  |                                                                                                                                   gccatcgtcgtcgggcacacgtccgggcagtgggtgtagccgaagaacatcaccaccgccttgcccttgaagtcggcgatggtgcgcaccttgccgtgatggtcggtcagcgagaagtccttgccgaagTccgc                                                                                                                                >  2:630662‑M1/130‑134 (MQ=255)                                   tGTCGCCGCCCTCCGGTGCCGCTGTTTCCTCCCACCCCTGACCGGTTTCCGCCGCATGCCCCGCCTAAGCCCCGCCTCCGGCCTGTTCGCCGCCTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCg                                                                                              >  2:77084/1‑134 (MQ=255)                                       gccgccCTCCGGTGCCGCTGTTTCCTCCCACCCCTGACCGGTTTCCGCCGCATGCCCCGCCTAAGCCCCGCCTCCGGCCTGTTCGCCGCCTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGc                                                                                          >  1:246396/1‑134 (MQ=255)                                             cTCCGGTGCCGCTGTTTCCTCCCACCCCTGACCGGTTTCCGCCGCATGCCCCGCCTAAGCCCCGCCTCCGGCCTGTTCGCCGCCTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGctgcctg                                                                                    <  2:246396/134‑1 (MQ=255)                                                                                              cccGCCTAAGCCCCGCCTCCGGCCTGTTCGCCGCCTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGCTGCCTGCGGGCAGCAGAAGGCCTCGTTCCGCAATGTCGACATCa                                              <  1:96999/123‑1 (MQ=255)                                                                                              cccGCCTAAGCCCCGCCTCCGGCCTGTTCGCCGCCTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGCTGCCTGCGGGCAGCAGAAGGCCTCGTTCCGCAATGTCGACATCa                                              >  2:96999/1‑123 (MQ=255)                                                                                                 tgatggtcggtcagcgagaagtccttgccgaagTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGctg                                                                                        >  1:118521‑M1/34‑78 (MQ=255)                                                                                                 tgatggtcggtcagcgagaagtccttgccgaagTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGctg                                                                                        <  2:118521‑M1/45‑1 (MQ=255)                                                                                                                 cGGCCTGTTCGCCGCCTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGCTGCCTGCGGGCAGCAGAAGGCCTCGTTCCGCAATGTCGACATCACCGGCGCGGCGGACTTCGGCAAGGACTtct                >  2:572213/1‑134 (MQ=255)                                                                                                                            ccgccTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGCTGCCTGCGGGCAGCAGAAGGCCTCGTTCCGCAATGTCGACATCACCGGCGCGGCGGACTTCGGCAAGGACTTCTCGCTgaccgac     >  1:983762/1‑134 (MQ=255)                                                                                                                            ccgccTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGCTGCCTGCGGGCAGCAGAAGGCCTCGTTCCGCAATGTCGACATCACCGGCGCGGCGGACTTCGGCAAGGACTTCTCGCTgaccgac     >  2:410546/1‑134 (MQ=255)                                                                                                                               aagTCCGCCGCTTATCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGCTGCCTGCGGGCAGCAGAAGGCCTCGTTCCGCAATGTCGACATCACCGGCGCGGCGGACTTCGGCAAGGACTTCTCGCTGACCGACCAt  <  1:151338‑M1/131‑1 (MQ=255)                                                                                                                                  |                                                                                                                                   GCAGCGTGGCGGCACGATCGGCGATACTGCGTGATGTCGCCGCCCTCCGGTGCCGCTGTTTCCTCCCACCCCTGACCGGTTTCCGCCGCATGCCCCGCCTAAGCCCCGCCTCCGGCCTGTTCGCCGCCTTCCGCCGCTTTTCCCTGCTGGCCGCGCTTGCGCTGGCCGTGGCTGCCTGCGGGCAGCAGAAGGCCTCGTTCCGCAATGTCGACATCACCGGCGCGGCGGACTTCGGCAAGGACTTCTCGCTGACCGACCAT  >  AM260479/370742‑371001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.