| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 741813 | 16 (0.590) | 4 (0.190) | 4/168 | 1.8 | 23.1% | coding (231/1320 nt) | gltR2 | response regulator of C4‑dicarboxylate transportsystem |
| ? | AM260479 | = 741791 | 14 (0.650) | coding (253/1320 nt) | gltR2 | response regulator of C4‑dicarboxylate transportsystem | |||||
AGCGCGCGGCGCGTGGCGTCCACCAGCTGCTCGGGCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTGACGACCACGCCGGCATAGCCCGGCCCGGCCTCGCGCAAC > AM260479/741685‑741924 | aGCGCGCGGCGCGTGGCGTCCACCAGCTGCTCGGGCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGA < 1:754586‑M1/115‑1 (MQ=255)aGCGCGCGGCGCGTGGCGTCCACCAGCTGCTCGGGCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGA > 2:754586‑M1/1‑115 (MQ=255) gcggcgcgTGGCGTCCACCAGCTGCTCGGGCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGt > 1:1055281/1‑134 (MQ=255) caGCTGCTCGGGCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGgccggtgatcatgatcaccggccatggcgacgtggggctggcggtgcagg < 2:846531‑M2/134‑51 (MQ=255) caGCTGCTCGGGCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCaactgcg < 2:1051797/134‑7 (MQ=255) gggCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCcatggcgacgtggggctggcggtgcaggcgatgaag < 1:846531‑M1/133‑37 (MQ=255) ggCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAgcgc < 2:762342/134‑1 (MQ=255) cGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGgccggtgatcatg < 2:377831‑M2/85‑14 (MQ=255) cGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATG < 1:377831‑M1/85‑1 (MQ=255) aGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCgg > 1:536779/1‑134 (MQ=255) tCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCg < 2:536779/134‑1 (MQ=255) aGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCcatggcgacg > 2:793165‑M1/1‑68 (MQ=255) aGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCcatggcgacg < 1:793165‑M1/78‑11 (MQ=255) cTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGgccggtgatcatgatcaccggccatggcgacgtggggctggcggtgcaggcgatgaagcaaggcgcctacgacttcctggaaaagccgttctcgccc < 1:846531‑M2/133‑98 (MQ=255) cTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTgacga > 1:205865/1‑134 (MQ=255) cATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTgacgac < 2:1055281/132‑1 (MQ=255) ccTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCcatggcgacgtggggctggcggtgcaggcgatgaagcaaggcgcctacgacttcctggaaaagccgttctcgcccgagcagctg < 2:846531‑M1/134‑85 (MQ=255) ccGCCAGCCCCACGTCGCCATGgccggtgatcatg > 2:805932‑M2/1‑22 (MQ=255) ccGCCAGCCCCACGTCGCCATGGCCGGTGATCATG > 1:805932‑M1/1‑35 (MQ=255) cACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTGACGACCACGCCGGCATAGcccggcccgg > 2:502628/1‑134 (MQ=255) cGTCGCCATGgccggtgatcatgatcaccggccatggcgacgtggggctggcggtgcaggcgatgaagcaaggcgcct < 1:793165‑M2/78‑69 (MQ=255) cGTCGCCATGgccggtgatcatgatcaccggccatggcgacgtggggctggcggtgcaggcgatgaagcaaggcgcct > 2:793165‑M2/1‑10 (MQ=255) gTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTGACGACCACGCCGGCATAGCCCGGCCCGGCCt < 2:626425/134‑1 (MQ=255) cGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGcgcg < 2:864811/59‑1 (MQ=255) cGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGcgcg > 1:864811/1‑59 (MQ=255) cATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTGACGACCACGCCGGCATAGCCCGGCCCGGCCTCgcgc < 2:205865/134‑1 (MQ=255) ggCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTGACGACCACGCCGGCATAGCCCGGCCCGGCCTCGCGCAAc > 2:825064/1‑134 (MQ=255) ggCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTGACGACCACGCCGGCATAGCCCGGCCCGGCCTCGCGCAAc > 1:320682/1‑134 (MQ=255) | AGCGCGCGGCGCGTGGCGTCCACCAGCTGCTCGGGCGAGAACGGCTTTTCCAGGAAGTCGTAGGCGCCTTGCTTCATCGCCTGCACCGCCAGCCCCACGTCGCCATGGCCGGTGATCATGATCACCGGCAGCGCGGGGTCGCGCTCGCGCAGTTGCGCGAGCAGCGCCATGCCGTCCTGGCCCGGCAGGCGAATGTCGCTGACGACCACGCCGGCATAGCCCGGCCCGGCCTCGCGCAAC > AM260479/741685‑741924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |