Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AM260479 | 518,612 | 0 | G | C | 100.0% | 173.7 / NA | 45 | intergenic (+17/‑48) | h16_A0492/pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (21/24); total (21/24) |
GCTCGATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGGGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCGGGA > AM260479/518484‑518742 | gCTCGATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAg > 1:995822/1‑134 (MQ=255) gcgcgcAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCaa < 2:995822/134‑1 (MQ=255) ggTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAAt > 1:418521/1‑134 (MQ=255) gTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATc < 2:395141/134‑1 (MQ=255) gcgAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGa < 1:1053997/134‑1 (MQ=255) ccAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACgg > 2:856237/1‑133 (MQ=255) aTGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGc < 1:353544/85‑1 (MQ=255) aTGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGc > 2:353544/1‑85 (MQ=255) cTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGcc > 2:661917/1‑134 (MQ=255) cTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGcc > 2:1020514/1‑134 (MQ=255) gcgcAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGccc < 1:661917/132‑1 (MQ=255) ccAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 1:429299/134‑1 (MQ=255) ccAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 2:337523/134‑1 (MQ=255) ccAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 2:337522/134‑1 (MQ=255) ccAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 2:1051341/134‑1 (MQ=255) aGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAtt > 2:612291/1‑134 (MQ=255) cTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 1:612291/134‑1 (MQ=255) aCCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTg < 2:740492/133‑1 (MQ=255) ggCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCt < 1:608627/134‑1 (MQ=255) cACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 2:387612/121‑1 (MQ=255) cACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa > 1:387612/1‑121 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGc < 1:793454/40‑1 (MQ=37) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGc > 2:793454/1‑40 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGccc < 2:213350/95‑1 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGccc > 1:213350/1‑95 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa > 2:1080472/1‑104 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 1:1080472/104‑1 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa > 2:727823/1‑104 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 1:727823/104‑1 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt < 1:941129/105‑1 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt > 2:941129/1‑105 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 2:395680/109‑1 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc > 1:395680/1‑109 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGAt > 2:723479/1‑134 (MQ=255) ccAATCTGACGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAg > 1:955425/1‑73 (MQ=255) ccAATCTGACGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAg < 2:955425/73‑1 (MQ=39) ggCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCAc > 1:803472/1‑134 (MQ=255) gCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt > 1:500026/1‑97 (MQ=255) gCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt < 2:500026/97‑1 (MQ=255) gCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc > 2:827079/1‑101 (MQ=255) gCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 1:827079/101‑1 (MQ=255) ggCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTg > 2:1081263/1‑133 (MQ=255) ggCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATgg < 2:350910/59‑2 (MQ=255) ggCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGt > 1:350910/1‑59 (MQ=255) ccGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCGGGa < 1:1020514/134‑1 (MQ=255) | GCTCGATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGGGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCGGGA > AM260479/518484‑518742 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |